Os01g0259400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0259400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.48 | 0.576 | 5.67 | -0.0417 | 0.419 | 1.09 | 0.388 | -2.27 | -0.00352 | 8.78 | 24.71 | 59 | -- | -- |
| 157.55 | 0.585 | 5.7 | -0.359 | 0.402 | 1.37 | 1.01 | -- | -0.0602 | 10 | 24.6 | 57 | -- | -- |
| 150.66 | 0.576 | 5.66 | -0.0151 | 0.445 | 1.02 | -- | -2.49 | -0.00743 | 8.44 | 24.7 | 50 | -- | -- |
| 160.6 | 0.59 | 5.71 | -0.344 | 0.427 | 1.3 | -- | -- | -0.0819 | 8.62 | 24.37 | 80 | -- | -- |
| 160.23 | 0.59 | 5.67 | 0.0207 | -- | 0.98 | -- | -2.53 | 0.0118 | -- | 25.2 | 119 | -- | -- |
| 183.59 | 0.635 | 5.77 | -0.661 | 0.362 | -- | -1.12 | -- | -0.314 | 4.78 | -- | -- | -- | -- |
| 184.31 | 0.636 | 5.76 | -0.653 | 0.421 | -- | -- | -- | -0.307 | 6.72 | -- | -- | -- | -- |
| 169.64 | 0.607 | 5.71 | -0.336 | -- | 1.2 | -- | -- | -0.0554 | -- | 25.6 | 263 | -- | -- |
| 163.46 | 0.595 | 5.7 | -- | 0.434 | 1.43 | -- | -- | -0.0321 | 8.69 | 24.26 | 86 | -- | -- |
| 193.55 | 0.65 | 5.77 | -0.643 | -- | -- | -- | -- | -0.299 | -- | -- | -- | -- | -- |
| 195.55 | 0.654 | 5.74 | -- | 0.413 | -- | -- | -- | -0.234 | 6.82 | -- | -- | -- | -- |
| 172.39 | 0.612 | 5.7 | -- | -- | 1.34 | -- | -- | 0.00706 | -- | 25.6 | 266 | -- | -- |
| 204.47 | 0.667 | 5.75 | -- | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 3 | 143.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 7 | 144.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 9 | 145.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 13 | 145.85 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 11 |
| 14 | 145.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 19 | 146.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 20 | 146.40 | temperature | 25 | 720 | < th | dose independent | sin | 14 | NA |
| 21 | 146.40 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 15 |
| 22 | 146.46 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 37 | 146.94 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 57 | 147.43 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 19 |
| 59 | 147.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 79 | 147.94 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 88 | 148.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 90 | 148.08 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 91 | 148.10 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 99 | 148.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 103 | 148.36 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 5 |
| 104 | 148.36 | temperature | 20 | 270 | > th | dose dependent | sin | 13 | NA |
| 111 | 148.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 132 | 148.70 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 150 | 148.97 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 4 |
| 157 | 149.02 | temperature | 25 | 90 | < th | dose dependent | sin | 10 | NA |
| 174 | 149.16 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 181 | 149.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 184 | 149.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 21 |
| 208 | 149.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 212 | 149.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 252 | 149.61 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 325 | 149.88 | humidity | 50 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 353 | 150.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 362 | 150.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 370 | 150.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 398 | 150.27 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 3 |
| 401 | 150.28 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 17 |
| 408 | 150.34 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 3 |
| 434 | 150.43 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 23 |
| 435 | 150.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 459 | 150.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 16 |
| 464 | 150.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 490 | 150.72 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 8 |
| 496 | 150.75 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 513 | 150.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 523 | 150.87 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 17 |
| 524 | 150.87 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 545 | 150.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 556 | 150.96 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 3 |
| 559 | 150.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 561 | 150.96 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 562 | 150.96 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 590 | 151.05 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 614 | 151.15 | wind | 1 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 624 | 151.17 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 634 | 151.22 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 766 | 151.72 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 777 | 151.76 | humidity | 50 | 10 | > th | dose independent | rect. | 3 | 23 |
| 780 | 151.77 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 911 | 152.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 921 | 152.22 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 929 | 152.24 | wind | 1 | 10 | < th | dose independent | rect. | 2 | 1 |
| 956 | 152.35 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 2 | 1 |
| 978 | 152.42 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 1 |
| 993 | 152.47 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |