Os01g0259300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0259300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.76 | 0.512 | 10.9 | 0.0265 | 1.31 | 1.2 | -0.302 | 1.03 | 0.222 | 8.72 | 1010 | 23110 | -- | -- |
| 119.41 | 0.509 | 10.9 | -0.361 | 1.31 | 1.28 | -0.139 | -- | 0.144 | 8.62 | 1010 | 24728 | -- | -- |
| 117.8 | 0.506 | 10.9 | 0.000246 | 1.29 | 1.33 | -- | 1.14 | 0.241 | 8.71 | 1010 | 23156 | -- | -- |
| 119.44 | 0.509 | 10.9 | -0.37 | 1.32 | 1.33 | -- | -- | 0.131 | 8.68 | 1010 | 24744 | -- | -- |
| 215.06 | 0.683 | 10.9 | -0.0489 | -- | 1.35 | -- | 1.06 | 0.259 | -- | 1010 | 23090 | -- | -- |
| 168.71 | 0.609 | 10.9 | 0.231 | 1.31 | -- | -0.321 | -- | 0.385 | 8.61 | -- | -- | -- | -- |
| 169.04 | 0.609 | 10.9 | 0.22 | 1.31 | -- | -- | -- | 0.385 | 8.59 | -- | -- | -- | -- |
| 216.42 | 0.685 | 10.9 | -0.406 | -- | 1.36 | -- | -- | 0.162 | -- | 1010 | 24586 | -- | -- |
| 122.9 | 0.516 | 10.9 | -- | 1.35 | 1.22 | -- | -- | 0.192 | 8.64 | 1010 | 24640 | -- | -- |
| 266.24 | 0.762 | 10.9 | 0.225 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 170.32 | 0.61 | 10.9 | -- | 1.32 | -- | -- | -- | 0.36 | 8.57 | -- | -- | -- | -- |
| 219.8 | 0.69 | 10.9 | -- | -- | 1.19 | -- | -- | 0.234 | -- | 1010 | 24601 | -- | -- |
| 267.58 | 0.764 | 10.9 | -- | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.97 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 2 | 121.99 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 3 | 122.39 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 4 | 122.79 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 5 | 122.87 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 6 | 123.11 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 7 | 123.21 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 8 | 123.23 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 14 | 123.32 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 28 | 123.48 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 29 | 123.51 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 32 | 123.55 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 33 | 123.57 | humidity | 50.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 41 | 123.63 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 42 | 123.63 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 45 | 123.65 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 54 | 123.67 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 85 | 123.72 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 90 | 123.73 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 95 | 123.78 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 108 | 123.85 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 116 | 123.88 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 117 | 123.88 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 119 | 123.91 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 121 | 123.91 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 127 | 123.96 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 12 | 20 |
| 128 | 123.97 | radiation | 40.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 129 | 123.97 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 152 | 124.02 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 12 | 20 |
| 163 | 124.06 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 177 | 124.13 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 179 | 124.13 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 181 | 124.14 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 196 | 124.17 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 197 | 124.17 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 200 | 124.18 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 227 | 124.22 | radiation | 10.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 275 | 124.25 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 294 | 124.26 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 301 | 124.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 411 | 124.37 | radiation | 40.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 438 | 124.40 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 449 | 124.42 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 522 | 124.50 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 526 | 124.52 | humidity | 50.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 575 | 124.56 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 576 | 124.56 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 584 | 124.59 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 621 | 124.60 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 622 | 124.60 | radiation | 1.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 655 | 124.62 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 706 | 124.67 | radiation | 10.0 | 43200 | < th | dose independent | no | NA | NA |
| 708 | 124.67 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 774 | 124.68 | radiation | 20.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 784 | 124.69 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 865 | 124.79 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 877 | 124.81 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 931 | 124.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |