Os01g0259200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase.
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Os01g0259200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.79 | 0.168 | 12.4 | 0.422 | 0.789 | 0.432 | -0.585 | 0.452 | 0.181 | 22.1 | 20.07 | 3486 | -- | -- |
| 12.78 | 0.167 | 12.4 | 0.432 | 0.789 | 0.292 | -0.557 | -- | 0.168 | 22 | 21.79 | 2894 | -- | -- |
| 14.13 | 0.175 | 12.4 | 0.432 | 0.794 | 0.421 | -- | 0.4 | 0.179 | 22.1 | 20.1 | 3467 | -- | -- |
| 13.78 | 0.173 | 12.4 | 0.446 | 0.803 | 0.313 | -- | -- | 0.169 | 22 | 21.6 | 1405 | -- | -- |
| 50.53 | 0.331 | 12.4 | 0.43 | -- | 0.432 | -- | 0.158 | 0.139 | -- | 21.51 | 2266 | -- | -- |
| 15.31 | 0.183 | 12.4 | 0.556 | 0.803 | -- | -0.558 | -- | 0.256 | 22.1 | -- | -- | -- | -- |
| 16.53 | 0.19 | 12.4 | 0.578 | 0.806 | -- | -- | -- | 0.258 | 22.1 | -- | -- | -- | -- |
| 39.38 | 0.292 | 12.4 | 0.513 | -- | 0.571 | -- | -- | 0.0963 | -- | 25 | 747 | -- | -- |
| 15.4 | 0.183 | 12.4 | -- | 0.8 | 0.494 | -- | -- | 0.0721 | 22.1 | 18.64 | 47520 | -- | -- |
| 55.77 | 0.349 | 12.4 | 0.588 | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
| 25.33 | 0.235 | 12.4 | -- | 0.808 | -- | -- | -- | 0.193 | 22.1 | -- | -- | -- | -- |
| 42.78 | 0.305 | 12.4 | -- | -- | 0.697 | -- | -- | -0.0326 | -- | 25.26 | 789 | -- | -- |
| 64.9 | 0.376 | 12.4 | -- | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 4 | 12.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 5 | 12.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 7 | 12.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 23 | 12.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 34 | 12.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 41 | 12.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 69 | 12.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 70 | 12.56 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 78 | 12.57 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 83 | 12.58 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 92 | 12.59 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 95 | 12.59 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 104 | 12.60 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 105 | 12.60 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 117 | 12.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 118 | 12.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 135 | 12.62 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 149 | 12.63 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 177 | 12.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 239 | 12.66 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 15 |
| 241 | 12.67 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 250 | 12.67 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 15 | NA |
| 284 | 12.68 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 305 | 12.69 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 328 | 12.70 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 397 | 12.72 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 479 | 12.75 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 488 | 12.75 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 560 | 12.78 | radiation | 40 | 43200 | > th | dose independent | sin | 14 | NA |
| 645 | 12.80 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 17 | NA |
| 688 | 12.81 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 723 | 12.82 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 770 | 12.83 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 812 | 12.84 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 17 | NA |
| 815 | 12.84 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 817 | 12.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 861 | 12.84 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 880 | 12.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 933 | 12.86 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 973 | 12.86 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 976 | 12.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 977 | 12.86 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |