Os01g0258600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0258600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.04 | 0.431 | 7.42 | -1.78 | 1.06 | -2.19 | -0.297 | -0.636 | -0.604 | 15.2 | 29.26 | 4403 | -- | -- |
| 84.26 | 0.428 | 7.43 | -1.89 | 1.06 | -2.13 | -0.287 | -- | -0.594 | 15.2 | 31.46 | 4399 | -- | -- |
| 84.31 | 0.428 | 7.42 | -1.79 | 1.05 | -2.21 | -- | -0.718 | -0.61 | 15.2 | 28.85 | 4422 | -- | -- |
| 84.53 | 0.428 | 7.43 | -1.89 | 1.06 | -2.13 | -- | -- | -0.587 | 15.2 | 32.05 | 4399 | -- | -- |
| 98.98 | 0.466 | 7.45 | -1.51 | -- | -2.42 | -- | 0.149 | -0.651 | -- | 29.3 | 4711 | -- | -- |
| 165.55 | 0.603 | 7.33 | -0.893 | 0.976 | -- | -0.29 | -- | -0.151 | 15.2 | -- | -- | -- | -- |
| 165.82 | 0.603 | 7.34 | -0.899 | 0.975 | -- | -- | -- | -0.153 | 15.3 | -- | -- | -- | -- |
| 95.41 | 0.457 | 7.42 | -1.47 | -- | -2.93 | -- | -- | -0.569 | -- | 56.31 | 4714 | -- | -- |
| 140.53 | 0.555 | 7.37 | -- | 0.449 | -2.09 | -- | -- | -0.302 | 16.6 | 47.33 | 91 | -- | -- |
| 219.66 | 0.693 | 7.34 | -0.94 | -- | -- | -- | -- | -0.178 | -- | -- | -- | -- | -- |
| 187.1 | 0.64 | 7.31 | -- | 0.993 | -- | -- | -- | -0.0525 | 15.3 | -- | -- | -- | -- |
| 149.05 | 0.57 | 7.38 | -- | -- | -2.48 | -- | -- | -0.355 | -- | 81.64 | 91 | -- | -- |
| 242.97 | 0.728 | 7.31 | -- | -- | -- | -- | -- | -0.0739 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.59 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 2 | 78.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 4 | 78.66 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 19 | 78.82 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 33 | 78.96 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 154 | 79.63 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 233 | 80.16 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 277 | 80.42 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |