Os01g0258000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0258000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.63 | 0.525 | 6.31 | 1.91 | 0.379 | -0.225 | -0.11 | 8.07 | 0.138 | 16.8 | 27.28 | 3924 | -- | -- |
| 133.29 | 0.538 | 6.48 | 0.327 | 0.321 | 0.606 | -0.0767 | -- | -0.0877 | 16.1 | 27.3 | 4873 | -- | -- |
| 124.61 | 0.52 | 6.31 | 1.91 | 0.373 | -0.235 | -- | 8.17 | 0.138 | 16.8 | 27.35 | 3858 | -- | -- |
| 132.53 | 0.536 | 6.5 | 0.292 | 0.352 | 0.7 | -- | -- | -0.0569 | 16.5 | 28.68 | 3949 | -- | -- |
| 131.93 | 0.535 | 6.3 | 1.92 | -- | -0.283 | -- | 8.35 | 0.128 | -- | 27.4 | 3737 | -- | -- |
| 148.21 | 0.571 | 6.51 | 0.479 | 0.324 | -- | -0.225 | -- | -0.134 | 17.1 | -- | -- | -- | -- |
| 148.33 | 0.57 | 6.51 | 0.478 | 0.324 | -- | -- | -- | -0.135 | 17.2 | -- | -- | -- | -- |
| 136.6 | 0.544 | 6.57 | 0.175 | -- | 0.649 | -- | -- | -0.421 | -- | 27.6 | 12001 | -- | -- |
| 134.59 | 0.54 | 6.51 | -- | 0.361 | 0.759 | -- | -- | -0.123 | 16.6 | 27.5 | 4082 | -- | -- |
| 153.81 | 0.58 | 6.51 | 0.467 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 154.35 | 0.581 | 6.52 | -- | 0.316 | -- | -- | -- | -0.188 | 17.3 | -- | -- | -- | -- |
| 134.81 | 0.541 | 6.59 | -- | -- | 0.76 | -- | -- | -0.533 | -- | 30.9 | 13320 | -- | -- |
| 159.55 | 0.59 | 6.52 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.07 | humidity | 60 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 4 | 120.82 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 9 | 121.95 | humidity | 70 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 12 | 122.09 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 14 | 122.17 | humidity | 70 | 14400 | > th | dose independent | sin | 11 | NA |
| 18 | 122.33 | humidity | 70 | 14400 | < th | dose independent | sin | 11 | NA |
| 19 | 122.34 | humidity | 70 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 22 | 122.39 | humidity | 80 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 25 | 122.42 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 27 | 122.47 | humidity | 80 | 14400 | < th | dose dependent | sin | 16 | NA |
| 41 | 122.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 44 | 122.59 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 45 | 122.59 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 48 | 122.60 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 56 | 122.61 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 58 | 122.61 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 59 | 122.61 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 85 | 122.62 | humidity | 80 | 14400 | < th | dose dependent | rect. | 11 | 13 |
| 128 | 122.71 | humidity | 80 | 14400 | < th | dose dependent | rect. | 15 | 21 |
| 180 | 122.81 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 20 |
| 184 | 122.82 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 198 | 122.85 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 9 |
| 256 | 122.92 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 311 | 122.96 | humidity | 80 | 14400 | < th | dose dependent | no | NA | NA |
| 319 | 122.97 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 375 | 123.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 401 | 123.20 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 422 | 123.24 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 423 | 123.24 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 438 | 123.27 | humidity | 50 | 14400 | > th | dose dependent | rect. | 9 | 12 |
| 583 | 123.46 | humidity | 70 | 14400 | < th | dose independent | no | NA | NA |
| 591 | 123.46 | humidity | 70 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 626 | 123.46 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 665 | 123.49 | humidity | 60 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 711 | 123.52 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 712 | 123.52 | humidity | 50 | 14400 | > th | dose dependent | sin | 22 | NA |
| 726 | 123.54 | humidity | 60 | 14400 | > th | dose independent | sin | 17 | NA |
| 727 | 123.54 | humidity | 70 | 14400 | > th | dose independent | no | NA | NA |
| 730 | 123.54 | humidity | 70 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 918 | 123.66 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 995 | 123.75 | humidity | 50 | 14400 | > th | dose dependent | rect. | 17 | 4 |