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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0257900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5 (0.0341) R2 : 0.672
β1 : -2.81 (0.125) R2dD : 0.379 R2D : 0.343
β2 : 1.7 (0.0808) R2dC : 0.32 R2C : 0.304
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.215 (0.0728) R2dN8 : 0.00842 R2N8 : -0.0142
σ : 0.641
deviance : 187.58
__
_____
C
peak time of C : 24
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
175.96 0.623 5.03 -2.77 1.7 -0.587 0.0992 -0.651 -0.33 24 1005 4399 -- --
176.48 0.619 5.03 -2.76 1.7 -0.612 0.0816 -- -0.344 24 1005 4392 -- --
176.01 0.618 5.03 -2.78 1.7 -0.587 -- -0.643 -0.33 24 1005 4399 -- --
176.5 0.619 5.03 -2.76 1.7 -0.611 -- -- -0.342 24 1005 4393 -- --
355.84 0.879 4.99 -2.74 -- -0.635 -- -0.421 -0.333 -- 1006 4831 -- --
187.56 0.642 5 -2.81 1.7 -- 0.0612 -- -0.215 24 -- -- -- --
187.58 0.641 5 -2.81 1.7 -- -- -- -0.215 24 -- -- -- --
355.67 0.878 4.99 -2.66 -- -0.69 -- -- -0.328 -- 1006 4867 -- --
350.61 0.872 4.89 -- 1.63 -1.1 -- -- 0.285 0.132 1013 7337 -- --
369.81 0.899 4.96 -2.76 -- -- -- -- -0.192 -- -- -- -- --
396.17 0.931 4.93 -- 1.67 -- -- -- 0.0982 23.9 -- -- -- --
508.24 1.05 4.85 -- -- -1.4 -- -- 0.317 -- 1016 8647 -- --
570.9 1.12 4.9 -- -- -- -- -- 0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.31 radiation 1.0 14400 < th dose dependent rect. 3 1
3 169.48 radiation 10.0 10 < th dose dependent rect. 3 23
5 170.86 temperature 25.0 90 > th dose dependent rect. 1 1
8 171.04 radiation 1.0 90 < th dose independent rect. 3 16
9 171.26 atmosphere 995.0 30 > th dose independent rect. 3 23
10 171.32 radiation 1.0 90 < th dose dependent rect. 3 16
11 171.42 temperature 25.0 90 > th dose independent rect. 1 2
14 171.57 wind 1.0 30 < th dose independent rect. 2 1
16 171.61 wind 3.0 30 < th dose dependent rect. 2 1
19 171.64 atmosphere 1005.0 30 > th dose dependent rect. 2 1
22 171.66 atmosphere 1000.0 30 > th dose independent rect. 2 1
29 171.70 temperature 25.0 30 < th dose independent rect. 2 1
30 171.70 humidity 90.0 30 > th dose independent rect. 2 1
31 171.70 temperature 10.0 30 > th dose dependent rect. 2 1
33 171.70 humidity 70.0 30 > th dose dependent rect. 2 1
36 171.71 temperature 10.0 30 > th dose independent rect. 2 1
39 171.71 humidity 50.0 30 > th dose independent rect. 2 1
44 171.71 atmosphere 1010.0 30 < th dose independent rect. 2 1
46 171.71 radiation 1.0 30 < th dose independent rect. 2 1
51 171.71 precipitation 0.1 30 < th dose independent rect. 2 1
52 171.71 temperature 10.0 30 > th dose independent rect. 3 23
53 171.71 humidity 50.0 30 > th dose dependent rect. 2 1
55 171.71 radiation 1.0 30 < th dose dependent rect. 2 1
60 171.71 precipitation 0.1 30 < th dose dependent rect. 2 1
62 171.73 temperature 30.0 30 < th dose dependent rect. 2 1
67 171.81 atmosphere 1015.0 30 < th dose dependent rect. 2 1
84 172.03 wind 1.0 30 > th dose independent rect. 2 1
126 172.37 humidity 50.0 30 > th dose independent rect. 3 23
132 172.42 wind 9.0 1440 < th dose independent rect. 3 1
133 172.42 temperature 10.0 1440 > th dose independent rect. 3 1
136 172.42 temperature 30.0 1440 < th dose independent rect. 3 1
140 172.42 humidity 50.0 1440 > th dose independent rect. 3 1
149 172.42 atmosphere 995.0 1440 > th dose independent rect. 3 1
150 172.42 radiation 1.0 1440 < th dose independent rect. 3 1
170 172.42 temperature 10.0 1440 > th dose independent rect. 4 23
178 172.44 precipitation 0.1 30 < th dose independent rect. 3 23
179 172.44 precipitation 0.1 30 < th dose dependent rect. 3 23
183 172.79 atmosphere 1005.0 90 > th dose independent rect. 3 8
186 173.13 humidity 80.0 720 > th dose independent rect. 20 1
191 173.30 atmosphere 1005.0 4320 < th dose independent rect. 21 1
193 173.38 atmosphere 1005.0 4320 > th dose independent rect. 20 3
194 173.39 atmosphere 1005.0 4320 > th dose independent rect. 21 1
197 173.47 atmosphere 1005.0 90 > th dose independent rect. 3 10
198 173.51 radiation 1.0 30 < th dose independent rect. 3 23
200 173.59 atmosphere 1000.0 90 > th dose independent rect. 19 8
204 173.71 temperature 25.0 270 > th dose dependent rect. 22 9
205 173.85 wind 9.0 90 < th dose dependent rect. 13 14
210 173.96 wind 9.0 30 < th dose independent rect. 3 23
214 174.08 humidity 50.0 90 > th dose dependent rect. 3 10
233 174.37 temperature 20.0 90 > th dose independent rect. 3 3
258 174.61 wind 9.0 30 < th dose dependent rect. 3 10
284 174.81 precipitation 0.1 90 < th dose independent rect. 13 14
285 174.81 precipitation 0.1 90 < th dose dependent rect. 13 14
315 174.99 humidity 80.0 720 > th dose dependent rect. 3 1
320 175.01 atmosphere 1015.0 30 < th dose independent rect. 3 23
323 175.03 humidity 60.0 14400 < th dose independent rect. 17 1
325 175.03 temperature 25.0 720 > th dose dependent rect. 17 6
326 175.05 radiation 10.0 1440 > th dose independent rect. 17 1
339 175.07 wind 5.0 4320 < th dose independent rect. 20 1
353 175.12 wind 7.0 30 < th dose dependent rect. 20 7
366 175.19 humidity 70.0 720 < th dose independent rect. 18 1
379 175.26 temperature 20.0 30 > th dose dependent rect. 3 3
380 175.27 radiation 10.0 1440 < th dose independent rect. 17 11
381 175.27 radiation 40.0 10 < th dose independent rect. 12 15
398 175.34 atmosphere 1005.0 4320 > th dose independent sin 10 NA
399 175.34 wind 5.0 4320 > th dose independent rect. 20 1
400 175.34 atmosphere 1005.0 4320 > th dose independent rect. 24 1
402 175.34 humidity 90.0 90 < th dose independent rect. 1 15
405 175.35 atmosphere 1005.0 4320 < th dose independent sin 11 NA
416 175.37 atmosphere 1005.0 4320 < th dose independent rect. 20 18
429 175.41 radiation 10.0 1440 < th dose independent rect. 17 1
432 175.41 atmosphere 995.0 90 > th dose dependent rect. 19 8
462 175.50 wind 3.0 4320 > th dose dependent rect. 20 1
467 175.52 atmosphere 1005.0 270 > th dose independent rect. 1 10
484 175.56 humidity 90.0 270 > th dose independent rect. 24 18
490 175.57 radiation 10.0 1440 < th dose independent rect. 17 9
495 175.59 atmosphere 1005.0 4320 > th dose independent rect. 4 1
498 175.59 temperature 25.0 720 > th dose dependent rect. 16 15
502 175.60 humidity 70.0 90 > th dose dependent rect. 3 16
506 175.62 humidity 90.0 720 > th dose independent rect. 3 1
514 175.63 wind 3.0 1440 < th dose dependent rect. 24 6
516 175.65 atmosphere 1005.0 4320 < th dose independent rect. 4 1
523 175.66 humidity 80.0 30 > th dose independent rect. 20 7
524 175.66 wind 5.0 30 < th dose dependent rect. 11 16
525 175.67 atmosphere 1005.0 720 > th dose independent rect. 3 1
531 175.68 radiation 1.0 90 > th dose independent sin 0 NA
552 175.72 temperature 20.0 30 > th dose independent rect. 3 17
555 175.73 radiation 1.0 90 < th dose independent sin 0 NA
562 175.74 wind 7.0 90 < th dose independent rect. 13 14
569 175.76 temperature 25.0 270 > th dose independent rect. 22 9
590 175.81 humidity 80.0 720 > th dose independent rect. 19 4
637 175.92 atmosphere 1015.0 90 < th dose independent rect. 19 8
638 175.92 radiation 1.0 90 > th dose independent rect. 6 11
642 175.93 humidity 70.0 720 < th dose independent rect. 17 15
648 175.94 humidity 50.0 90 > th dose dependent rect. 3 16
653 175.95 wind 5.0 10 < th dose dependent rect. 22 5
661 175.97 wind 5.0 90 < th dose independent rect. 19 8
672 175.99 precipitation 0.1 90 < th dose independent rect. 5 22
675 175.99 precipitation 0.1 90 < th dose dependent rect. 5 22
696 176.02 radiation 1.0 90 < th dose dependent sin 0 NA
709 176.05 atmosphere 1005.0 4320 < th dose independent rect. 12 20
756 176.09 atmosphere 1015.0 90 < th dose independent rect. 13 14
766 176.10 wind 9.0 43200 > th dose independent rect. 16 18
785 176.12 atmosphere 1000.0 90 > th dose independent rect. 3 16
854 176.18 atmosphere 995.0 90 > th dose dependent rect. 3 16
856 176.19 atmosphere 1005.0 4320 < th dose independent no NA NA
886 176.22 atmosphere 1005.0 4320 < th dose independent rect. 2 23
900 176.23 radiation 10.0 1440 > th dose dependent rect. 17 13
904 176.24 wind 9.0 43200 < th dose independent rect. 16 18
908 176.24 atmosphere 1005.0 4320 < th dose independent rect. 24 23
909 176.24 radiation 10.0 1440 > th dose dependent rect. 17 1
928 176.25 atmosphere 1015.0 90 < th dose independent rect. 5 22
935 176.27 humidity 60.0 14400 > th dose independent rect. 17 1
941 176.27 radiation 10.0 14400 > th dose dependent rect. 17 13
951 176.29 radiation 1.0 90 < th dose independent rect. 3 11
981 176.33 atmosphere 1005.0 4320 > th dose independent rect. 11 21