Os01g0256900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SmX6 protein.
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Os01g0256900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SmX6 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.63 | 0.167 | 12.9 | -0.152 | 0.307 | -0.146 | 0.175 | -1.57 | 0.115 | 16.6 | 19.24 | 678 | -- | -- |
| 14.71 | 0.179 | 12.9 | 0.195 | 0.348 | -0.252 | 0.0706 | -- | 0.214 | 16.3 | 17.68 | 421 | -- | -- |
| 12.66 | 0.166 | 12.9 | -0.144 | 0.29 | -0.149 | -- | -1.51 | 0.115 | 16.7 | 18.7 | 759 | -- | -- |
| 14.29 | 0.176 | 12.9 | 0.198 | 0.239 | -0.244 | -- | -- | 0.212 | 17.2 | 24.1 | 1099 | -- | -- |
| 16.68 | 0.19 | 12.9 | -0.18 | -- | -0.168 | -- | -1.33 | 0.105 | -- | 18.84 | 2529 | -- | -- |
| 15.66 | 0.185 | 12.9 | 0.129 | 0.269 | -- | 0.0844 | -- | 0.169 | 15.9 | -- | -- | -- | -- |
| 15.67 | 0.185 | 12.9 | 0.13 | 0.27 | -- | -- | -- | 0.17 | 16 | -- | -- | -- | -- |
| 17.16 | 0.193 | 12.9 | 0.207 | -- | -0.265 | -- | -- | 0.203 | -- | 24.22 | 1240 | -- | -- |
| 15.09 | 0.181 | 12.9 | -- | 0.245 | -0.164 | -- | -- | 0.17 | 16.1 | 24.4 | 1281 | -- | -- |
| 19.65 | 0.207 | 12.9 | 0.119 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 16.12 | 0.188 | 12.9 | -- | 0.268 | -- | -- | -- | 0.155 | 16 | -- | -- | -- | -- |
| 18.19 | 0.199 | 12.9 | -- | -- | -0.22 | -- | -- | 0.175 | -- | 24.35 | 1241 | -- | -- |
| 20.03 | 0.209 | 12.9 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.54 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 3 | 12.56 | temperature | 20.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 15 | 12.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 18 |
| 43 | 12.66 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 2 | 13 |
| 51 | 12.67 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 78 | 12.69 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 87 | 12.71 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 100 | 12.71 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 20 |
| 109 | 12.71 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 112 | 12.72 | temperature | 20.0 | 720 | > th | dose dependent | no | NA | NA |
| 160 | 12.74 | temperature | 10.0 | 720 | > th | dose dependent | sin | 1 | NA |
| 215 | 12.77 | temperature | 30.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 266 | 12.79 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 306 | 12.82 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 326 | 12.83 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 329 | 12.83 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 331 | 12.83 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 458 | 12.91 | temperature | 30.0 | 720 | < th | dose dependent | no | NA | NA |
| 499 | 12.94 | temperature | 25.0 | 720 | < th | dose independent | rect. | 5 | 8 |
| 512 | 12.95 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 17 |
| 531 | 12.96 | temperature | 25.0 | 720 | < th | dose independent | rect. | 20 | 15 |
| 607 | 13.01 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 631 | 13.01 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 662 | 13.04 | temperature | 30.0 | 270 | < th | dose independent | sin | 10 | NA |
| 695 | 13.06 | temperature | 30.0 | 720 | < th | dose independent | sin | 2 | NA |
| 696 | 13.06 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 728 | 13.08 | temperature | 25.0 | 720 | < th | dose independent | sin | 8 | NA |
| 747 | 13.09 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 11 |
| 748 | 13.09 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 11 |
| 771 | 13.10 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 792 | 13.11 | wind | 1.0 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 938 | 13.15 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 23 |
| 971 | 13.17 | wind | 1.0 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 976 | 13.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |