Os01g0256500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ramy1.
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Os01g0256500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ramy1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.26 | 0.484 | 14.5 | -0.113 | 0.915 | -1.69 | -0.183 | -1.09 | 0.156 | 3.54 | 21.66 | 12 | -- | -- |
| 106.81 | 0.481 | 14.5 | 0.0617 | 0.895 | -1.77 | 0.112 | -- | 0.202 | 3.45 | 22.1 | 13 | -- | -- |
| 106.32 | 0.48 | 14.5 | -0.0744 | 0.912 | -1.69 | -- | -0.854 | 0.164 | 3.48 | 21.89 | 12 | -- | -- |
| 106.76 | 0.481 | 14.5 | 0.0655 | 0.895 | -1.76 | -- | -- | 0.204 | 3.43 | 22.2 | 17 | -- | -- |
| 135.16 | 0.541 | 14.5 | 0.289 | -- | -2.57 | -- | 0.503 | 0.334 | -- | 23 | 21 | -- | -- |
| 153.95 | 0.582 | 14.6 | -0.279 | 1.56 | -- | 0.687 | -- | -0.0783 | 3.06 | -- | -- | -- | -- |
| 155.48 | 0.584 | 14.6 | -0.294 | 1.57 | -- | -- | -- | -0.0826 | 3.12 | -- | -- | -- | -- |
| 135.16 | 0.541 | 14.5 | 0.222 | -- | -2.56 | -- | -- | 0.319 | -- | 22.96 | 21 | -- | -- |
| 106.86 | 0.481 | 14.5 | -- | 0.903 | -1.74 | -- | -- | 0.193 | 3.42 | 22.2 | 18 | -- | -- |
| 295.85 | 0.804 | 14.6 | -0.227 | -- | -- | -- | -- | -0.0416 | -- | -- | -- | -- | -- |
| 157.76 | 0.588 | 14.6 | -- | 1.56 | -- | -- | -- | -0.0499 | 3.12 | -- | -- | -- | -- |
| 136.4 | 0.544 | 14.5 | -- | -- | -2.51 | -- | -- | 0.289 | -- | 23 | 21 | -- | -- |
| 297.2 | 0.805 | 14.6 | -- | -- | -- | -- | -- | -0.0165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 2 | 102.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 3 | 102.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 12 | 104.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 13 |
| 25 | 105.51 | temperature | 30 | 30 | < th | dose dependent | sin | 20 | NA |
| 26 | 105.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 30 | 105.96 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 15 |
| 43 | 106.43 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 13 |
| 47 | 106.49 | temperature | 25 | 90 | < th | dose independent | sin | 20 | NA |
| 50 | 106.59 | temperature | 25 | 90 | > th | dose independent | sin | 20 | NA |
| 66 | 107.13 | temperature | 10 | 30 | > th | dose dependent | sin | 20 | NA |
| 71 | 107.23 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 11 |
| 114 | 108.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 125 | 108.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 126 | 108.46 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 129 | 108.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 139 | 108.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 143 | 108.76 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 16 |
| 150 | 108.81 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 164 | 108.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 257 | 109.95 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 329 | 110.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 330 | 110.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 446 | 111.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 458 | 111.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 528 | 112.20 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 570 | 112.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 576 | 112.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 617 | 112.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 664 | 113.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 688 | 113.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 718 | 113.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 724 | 113.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 742 | 113.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 796 | 113.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 828 | 114.11 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 837 | 114.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 874 | 114.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 878 | 114.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 896 | 114.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 920 | 114.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 934 | 114.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 938 | 114.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 945 | 114.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |