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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0255700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.22 (0.0298) R2 : 0.597
β1 : 2.43 (0.111) R2dD : 0.465 R2D : 0.326
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.95 (0.117) R2dE : 0.277 R2E : 0.138
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0503 (0.0659) R2dN8 : 0.00079 R2N8 : -0.012
σ : 0.551
deviance : 140.2
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.5
memory length : 390
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.89 0.531 5.13 3.09 0.239 -1.82 1.97 3.67 0.215 4.51 20.07 452 -- --
133.06 0.537 5.22 2.51 0.549 -1.77 1.43 -- 0.0402 3.16 17.37 667 -- --
135.01 0.541 5.17 2.8 0.358 -1.83 -- 1.77 0.126 3.08 18.97 546 -- --
137.15 0.545 5.22 2.43 0.403 -1.85 -- -- 0.0253 3.17 17.19 560 -- --
138.07 0.547 5.17 2.8 -- -1.98 -- 1.96 0.154 -- 19.46 402 -- --
182.9 0.634 5.27 1.95 0.827 -- 1.53 -- -0.285 5.26 -- -- -- --
188.59 0.643 5.28 1.95 0.84 -- -- -- -0.291 5.48 -- -- -- --
140.2 0.551 5.22 2.43 -- -1.95 -- -- 0.0503 -- 18.5 390 -- --
273.66 0.77 5.28 -- 0.546 -0.919 -- -- -0.329 4.92 19.99 427 -- --
225.28 0.701 5.29 1.98 -- -- -- -- -0.271 -- -- -- -- --
288.88 0.795 5.33 -- 0.872 -- -- -- -0.509 5.39 -- -- -- --
283.86 0.785 5.3 -- -- -1.28 -- -- -0.307 -- 20.52 348 -- --
328.54 0.846 5.34 -- -- -- -- -- -0.49 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.62 wind 9 43200 > th dose dependent rect. 18 13
2 118.67 wind 9 43200 > th dose dependent rect. 18 3
3 118.72 wind 9 43200 > th dose independent rect. 18 3
4 118.84 wind 9 43200 > th dose dependent rect. 18 7
6 119.36 wind 9 43200 < th dose independent rect. 18 3
16 123.97 wind 9 43200 > th dose independent rect. 18 7
21 126.20 temperature 20 1440 > th dose dependent rect. 17 13
22 126.21 temperature 20 720 > th dose dependent rect. 19 20
28 126.37 wind 9 43200 > th dose independent rect. 18 13
33 126.49 temperature 20 720 > th dose dependent rect. 16 18
76 127.39 temperature 20 1440 > th dose dependent sin 12 NA
91 127.61 wind 9 43200 < th dose independent rect. 18 7
98 127.74 humidity 90 43200 > th dose independent rect. 22 16
104 127.85 humidity 90 43200 > th dose independent sin 5 NA
108 127.87 temperature 20 1440 > th dose dependent rect. 20 1
116 127.93 humidity 90 43200 > th dose independent rect. 24 14
120 127.97 humidity 90 43200 < th dose independent rect. 19 19
121 127.99 humidity 90 43200 > th dose independent rect. 1 11
127 128.03 humidity 90 43200 < th dose independent sin 5 NA
169 128.24 temperature 20 1440 > th dose dependent rect. 19 3
200 128.35 humidity 90 43200 > th dose independent rect. 2 9
216 128.43 humidity 90 43200 < th dose independent rect. 1 12
267 128.67 humidity 90 43200 > th dose independent rect. 3 7
284 128.77 humidity 90 43200 < th dose independent no NA NA
286 128.78 humidity 90 43200 < th dose independent rect. 11 23
294 128.80 humidity 90 43200 < th dose independent rect. 2 10
295 128.80 humidity 90 43200 < th dose independent rect. 9 23
330 128.96 humidity 90 43200 < th dose independent rect. 21 2
338 128.97 humidity 90 43200 < th dose independent rect. 24 23
365 129.05 humidity 90 43200 > th dose independent rect. 11 23
369 129.07 humidity 90 43200 > th dose independent rect. 9 23
380 129.11 humidity 90 43200 > th dose independent no NA NA
381 129.11 humidity 90 43200 > th dose independent rect. 4 3
392 129.15 temperature 20 270 > th dose dependent rect. 11 23
415 129.24 humidity 90 43200 > th dose independent rect. 5 1
419 129.25 humidity 90 43200 < th dose independent rect. 2 23
479 129.59 humidity 90 43200 > th dose dependent rect. 4 3
515 129.80 humidity 90 43200 < th dose independent rect. 3 8
565 130.13 humidity 80 43200 > th dose dependent rect. 3 12
570 130.18 humidity 80 43200 > th dose dependent sin 3 NA
574 130.22 humidity 90 43200 > th dose independent rect. 22 1
586 130.30 wind 9 43200 < th dose independent rect. 18 14
615 130.51 humidity 90 43200 > th dose dependent sin 5 NA
622 130.53 humidity 90 43200 > th dose dependent rect. 22 21
645 130.60 humidity 90 43200 > th dose dependent rect. 3 6
650 130.61 humidity 90 43200 > th dose dependent rect. 1 15
680 130.74 humidity 90 43200 < th dose independent sin 16 NA
684 130.74 humidity 90 43200 > th dose dependent rect. 18 22
690 130.75 humidity 90 43200 > th dose dependent rect. 11 23
694 130.76 humidity 90 43200 > th dose dependent rect. 14 22
719 130.82 humidity 90 43200 > th dose dependent rect. 17 19
732 130.84 humidity 90 43200 > th dose dependent no NA NA
737 130.84 humidity 90 43200 > th dose dependent rect. 8 23
766 130.89 humidity 90 43200 > th dose dependent rect. 3 23
778 130.95 humidity 90 43200 < th dose independent rect. 17 8
784 130.97 humidity 90 43200 < th dose independent rect. 15 11
807 131.05 temperature 25 1440 < th dose independent rect. 16 5
815 131.07 temperature 20 720 > th dose dependent no NA NA
882 131.28 humidity 90 43200 < th dose independent rect. 13 13
927 131.41 humidity 90 43200 > th dose dependent rect. 22 1
944 131.46 temperature 25 1440 > th dose independent rect. 16 5
957 131.51 atmosphere 995 43200 > th dose independent rect. 12 1
972 131.56 humidity 90 43200 > th dose independent sin 16 NA