Os01g0253000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LpimPth3.
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Os01g0253000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LpimPth3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.14 | 0.756 | 2.91 | 0.944 | 0.00936 | 0.425 | -1.45 | -9.79 | -0.135 | 17.9 | 30 | 643 | -- | -- |
| 269.39 | 0.764 | 3.02 | 0.0763 | 0.101 | -0.33 | -1.74 | -- | -0.198 | 17.3 | 34.05 | 1013 | -- | -- |
| 263.94 | 0.757 | 2.92 | 0.912 | 0.0247 | 0.462 | -- | -9.03 | -0.15 | 17.8 | 29.93 | 644 | -- | -- |
| 264.25 | 0.757 | 3.03 | 0.0423 | 0.213 | -0.404 | -- | -- | -0.228 | 17.2 | 29.4 | 5559 | -- | -- |
| 263.87 | 0.757 | 2.92 | 0.829 | -- | 0.315 | -- | -8.11 | -0.147 | -- | 29.9 | 644 | -- | -- |
| 272.27 | 0.774 | 3.03 | 0.125 | 0.147 | -- | -0.725 | -- | -0.25 | 17.6 | -- | -- | -- | -- |
| 273.47 | 0.774 | 3.04 | 0.127 | 0.149 | -- | -- | -- | -0.254 | 18.6 | -- | -- | -- | -- |
| 265.21 | 0.758 | 3.04 | -0.0239 | -- | -0.503 | -- | -- | -0.278 | -- | 28.9 | 5029 | -- | -- |
| 263.93 | 0.757 | 3.03 | -- | 0.165 | -0.429 | -- | -- | -0.254 | 17.3 | 29.2 | 5551 | -- | -- |
| 274.62 | 0.774 | 3.03 | 0.123 | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
| 273.89 | 0.774 | 3.04 | -- | 0.147 | -- | -- | -- | -0.268 | 18.7 | -- | -- | -- | -- |
| 265.23 | 0.759 | 3.04 | -- | -- | -0.503 | -- | -- | -0.276 | -- | 28.91 | 5008 | -- | -- |
| 275.02 | 0.774 | 3.04 | -- | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 249.58 | wind | 7 | 90 | > th | dose independent | rect. | 1 | 8 |
| 2 | 249.62 | wind | 7 | 90 | > th | dose independent | rect. | 3 | 6 |
| 4 | 249.62 | wind | 7 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 8 | 249.70 | wind | 7 | 90 | > th | dose independent | rect. | 7 | 2 |
| 12 | 249.72 | wind | 7 | 90 | > th | dose dependent | rect. | 7 | 2 |
| 17 | 249.96 | humidity | 70 | 10 | < th | dose dependent | rect. | 15 | 2 |
| 26 | 252.26 | humidity | 70 | 10 | < th | dose dependent | rect. | 15 | 5 |
| 42 | 252.75 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 9 |
| 46 | 253.12 | radiation | 30 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 62 | 253.16 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 22 |
| 63 | 253.19 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 127 | 253.39 | humidity | 70 | 10 | < th | dose independent | rect. | 15 | 5 |
| 141 | 253.46 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 2 |
| 188 | 253.57 | humidity | 60 | 90 | < th | dose independent | rect. | 15 | 1 |
| 224 | 253.81 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 2 |
| 296 | 254.38 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 11 |
| 371 | 255.09 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 2 |
| 373 | 255.12 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 18 |
| 374 | 255.15 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 6 |
| 402 | 255.42 | wind | 3 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 408 | 255.52 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 15 |
| 465 | 255.88 | temperature | 20 | 90 | < th | dose dependent | rect. | 21 | 1 |
| 491 | 255.96 | temperature | 20 | 90 | < th | dose independent | rect. | 20 | 1 |
| 559 | 256.30 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 608 | 256.67 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 627 | 256.76 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 17 |
| 649 | 257.05 | humidity | 70 | 10 | < th | dose dependent | sin | 13 | NA |
| 704 | 257.32 | wind | 3 | 90 | < th | dose independent | rect. | 14 | 8 |
| 707 | 257.44 | temperature | 30 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 756 | 257.75 | temperature | 30 | 270 | < th | dose independent | sin | 10 | NA |
| 783 | 257.94 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 17 |
| 785 | 257.99 | temperature | 30 | 720 | > th | dose dependent | sin | 9 | NA |
| 790 | 258.05 | temperature | 30 | 270 | > th | dose independent | sin | 10 | NA |
| 792 | 258.06 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 22 |
| 799 | 258.16 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 14 |
| 800 | 258.17 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 803 | 258.19 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 9 |
| 867 | 258.44 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 11 |
| 908 | 258.54 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 21 |
| 930 | 258.60 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 2 |
| 974 | 258.75 | wind | 3 | 90 | < th | dose dependent | rect. | 14 | 8 |
| 983 | 258.83 | humidity | 70 | 10 | > th | dose independent | sin | 13 | NA |
| 988 | 258.88 | humidity | 60 | 10 | < th | dose independent | sin | 12 | NA |
| 997 | 258.98 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 23 |