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Os01g0252900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCHC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.19 (0.021) R2 : 0.363
β1 : -1.02 (0.0768) R2dD : 0.256 R2D : 0.116
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.515 (0.0448) R2dN8 : 0.247 R2N8 : 0.107
σ : 0.394
deviance : 70.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.5 0.362 8.25 -1.45 0.363 0.626 -0.199 -0.976 -0.809 10.5 25.4 921 -- --
60.29 0.362 8.22 -1.19 0.367 0.598 0.0277 -- -0.722 10.4 25.6 902 -- --
59.12 0.358 8.25 -1.42 0.344 0.627 -- -0.94 -0.78 10.6 25.7 954 -- --
60.24 0.361 8.22 -1.2 0.358 0.59 -- -- -0.705 10.3 25.7 904 -- --
62.51 0.368 8.25 -1.43 -- 0.563 -- -0.924 -0.681 -- 25.4 4438 -- --
69.81 0.392 8.18 -1.02 0.138 -- -0.0763 -- -0.515 10.1 -- -- -- --
69.82 0.391 8.18 -1.02 0.138 -- -- -- -0.514 10.4 -- -- -- --
62.9 0.369 8.21 -1.23 -- 0.522 -- -- -0.63 -- 26.2 5916 -- --
94.56 0.455 8.18 -- 0.146 0.195 -- -- -0.488 7.07 25.5 827 -- --
70.99 0.394 8.19 -1.02 -- -- -- -- -0.515 -- -- -- -- --
97.15 0.461 8.16 -- 0.145 -- -- -- -0.401 10.9 -- -- -- --
85.54 0.431 8.12 -- -- -0.535 -- -- -0.227 -- 21.05 47520 -- --
98.46 0.463 8.16 -- -- -- -- -- -0.402 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.03 temperature 30.0 90 < th dose dependent rect. 14 17
4 52.32 radiation 10.0 43200 < th dose dependent rect. 19 9
5 52.34 temperature 30.0 10 < th dose dependent rect. 14 18
29 53.98 radiation 1.0 90 < th dose independent rect. 5 12
41 54.55 radiation 1.0 90 < th dose independent rect. 5 2
47 54.64 radiation 1.0 90 < th dose dependent rect. 5 12
53 54.93 radiation 1.0 90 < th dose independent rect. 5 7
62 55.19 radiation 10.0 30 < th dose dependent rect. 5 4
71 55.47 radiation 1.0 90 < th dose dependent rect. 5 7
93 56.07 temperature 10.0 30 > th dose dependent rect. 6 23
94 56.16 radiation 1.0 270 > th dose independent rect. 16 22
101 56.40 temperature 10.0 270 > th dose dependent rect. 17 9
146 57.06 precipitation 0.1 90 < th dose independent rect. 6 23
148 57.06 precipitation 0.1 90 < th dose dependent rect. 6 23
163 57.34 temperature 25.0 90 < th dose independent rect. 13 19
175 57.51 humidity 80.0 43200 < th dose independent rect. 7 1
180 57.62 radiation 1.0 43200 < th dose dependent rect. 24 4
210 57.94 temperature 25.0 720 < th dose independent rect. 18 1
218 58.03 wind 1.0 90 > th dose independent rect. 4 2
242 58.19 wind 9.0 43200 > th dose dependent rect. 19 2
247 58.25 wind 9.0 43200 < th dose independent rect. 19 2
260 58.34 wind 9.0 43200 > th dose independent rect. 19 2
270 58.42 temperature 30.0 270 < th dose dependent rect. 22 8
283 58.49 temperature 30.0 90 < th dose dependent rect. 5 1
285 58.53 wind 5.0 90 < th dose independent rect. 7 21
288 58.54 temperature 30.0 90 < th dose dependent rect. 4 3
303 58.64 atmosphere 1000.0 90 > th dose independent rect. 5 1
308 58.65 precipitation 0.1 720 < th dose independent rect. 16 17
309 58.65 temperature 30.0 90 < th dose dependent rect. 19 12
310 58.65 precipitation 0.1 720 < th dose dependent rect. 16 17
318 58.69 temperature 25.0 720 > th dose independent rect. 16 3
327 58.73 temperature 10.0 270 > th dose dependent rect. 6 19
329 58.74 atmosphere 1000.0 10 > th dose independent rect. 14 18
333 58.77 humidity 90.0 90 > th dose independent rect. 5 2
343 58.81 temperature 25.0 720 > th dose independent rect. 15 5
358 58.88 precipitation 0.1 720 < th dose independent rect. 13 15
359 58.88 precipitation 0.1 720 < th dose dependent rect. 13 15
364 58.91 precipitation 0.1 43200 > th dose independent rect. 17 1
365 58.91 precipitation 0.1 43200 > th dose dependent rect. 17 1
375 58.93 precipitation 0.1 720 < th dose independent rect. 6 23
376 58.93 humidity 80.0 30 > th dose dependent rect. 5 3
377 58.93 precipitation 0.1 720 < th dose dependent rect. 6 23
382 58.95 temperature 20.0 270 > th dose dependent rect. 17 17
398 59.02 precipitation 0.1 43200 < th dose independent rect. 17 1
399 59.02 precipitation 0.1 43200 < th dose dependent rect. 17 1
402 59.03 atmosphere 1000.0 10 > th dose independent rect. 12 20
403 59.03 atmosphere 1000.0 43200 < th dose dependent rect. 20 1
409 59.05 temperature 20.0 720 > th dose dependent rect. 16 2
426 59.13 radiation 1.0 720 < th dose dependent sin 15 NA
430 59.14 atmosphere 1005.0 43200 < th dose dependent rect. 14 1
433 59.15 atmosphere 1000.0 43200 > th dose independent rect. 2 1
434 59.15 atmosphere 1000.0 43200 < th dose independent rect. 2 1
435 59.15 wind 5.0 90 < th dose independent rect. 17 11
443 59.16 temperature 20.0 720 > th dose dependent rect. 15 4
449 59.18 atmosphere 1000.0 43200 < th dose independent rect. 20 1
450 59.18 radiation 1.0 720 > th dose independent rect. 16 2
461 59.19 atmosphere 995.0 43200 < th dose dependent rect. 15 1
492 59.23 temperature 25.0 4320 > th dose independent rect. 18 1
493 59.23 temperature 25.0 90 < th dose independent rect. 5 1
508 59.24 atmosphere 1000.0 43200 < th dose dependent rect. 18 11
510 59.25 atmosphere 1000.0 43200 > th dose independent rect. 20 1
512 59.25 atmosphere 1000.0 43200 > th dose independent rect. 20 7
513 59.25 atmosphere 1000.0 43200 < th dose independent rect. 20 7
515 59.25 atmosphere 1000.0 43200 < th dose dependent rect. 22 1
518 59.25 wind 9.0 43200 > th dose dependent rect. 19 6
524 59.25 atmosphere 1000.0 43200 < th dose dependent rect. 15 14
526 59.26 temperature 25.0 10 < th dose independent rect. 6 1
532 59.26 temperature 30.0 720 < th dose dependent rect. 19 1
540 59.26 humidity 80.0 30 > th dose dependent rect. 5 14
544 59.27 atmosphere 995.0 43200 < th dose independent rect. 14 1
551 59.27 atmosphere 1000.0 43200 < th dose dependent sin 14 NA
599 59.30 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
619 59.31 wind 9.0 43200 > th dose dependent rect. 19 9
623 59.31 atmosphere 995.0 10 > th dose dependent rect. 14 17
626 59.32 precipitation 0.1 43200 > th dose dependent rect. 20 1
634 59.32 atmosphere 1005.0 43200 < th dose dependent rect. 23 17
639 59.33 temperature 25.0 4320 < th dose independent rect. 18 2
656 59.33 atmosphere 1005.0 43200 < th dose dependent rect. 10 20
674 59.34 atmosphere 995.0 270 > th dose dependent rect. 12 18
675 59.34 atmosphere 1005.0 43200 < th dose dependent rect. 10 18
700 59.35 atmosphere 1005.0 43200 < th dose dependent rect. 10 15
739 59.36 atmosphere 1005.0 43200 < th dose dependent no NA NA
751 59.36 atmosphere 995.0 90 > th dose dependent rect. 14 17
768 59.36 atmosphere 1005.0 43200 < th dose dependent rect. 2 23
772 59.36 atmosphere 1005.0 43200 < th dose dependent rect. 13 23
783 59.37 atmosphere 1005.0 43200 < th dose dependent sin 7 NA
786 59.37 temperature 30.0 270 < th dose dependent rect. 1 5
839 59.38 atmosphere 1005.0 43200 < th dose dependent sin 19 NA
881 59.39 atmosphere 995.0 43200 > th dose independent rect. 12 1
896 59.39 atmosphere 1005.0 43200 < th dose dependent rect. 2 5
898 59.39 radiation 1.0 720 < th dose dependent rect. 16 7
899 59.39 atmosphere 1005.0 43200 < th dose dependent rect. 24 8