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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0252300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0455) R2 : 0.0186
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.282 (0.0959) R2dN8 : 0.024 R2N8 : 0.0186
σ : 0.857
deviance : 337.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
312.87 0.831 3.38 -0.728 0.0222 2.64 -1.36 -11.8 -0.215 19.2 1000 431 -- --
326.81 0.848 3.26 -0.0105 0.0443 0.415 -1.41 -- -0.239 19.6 1000 431 -- --
317.24 0.83 3.43 -1.03 0.016 3.6 -- -17.3 -0.206 20.4 1000 355 -- --
324.45 0.839 3.25 0.0869 0.0295 0.58 -- -- -0.181 19.9 1003 609 -- --
317.18 0.829 3.46 -1.1 -- 3.75 -- -18.1 -0.219 -- 1000 350 -- --
331.66 0.854 3.27 0.065 0.0497 -- -1.39 -- -0.268 19.6 -- -- -- --
336.99 0.86 3.27 0.0975 0.0644 -- -- -- -0.271 22.7 -- -- -- --
322.78 0.837 3.24 0.0456 -- 0.642 -- -- -0.168 -- 1003 1172 -- --
322.7 0.837 3.25 -- 0.041 0.64 -- -- -0.176 20.2 1003 1258 -- --
337.24 0.858 3.27 0.0987 -- -- -- -- -0.271 -- -- -- -- --
337.24 0.859 3.27 -- 0.0651 -- -- -- -0.282 22.8 -- -- -- --
322.79 0.837 3.24 -- -- 0.645 -- -- -0.172 -- 1003 1255 -- --
337.5 0.857 3.27 -- -- -- -- -- -0.282 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.96 atmosphere 1000 720 < th dose independent rect. 17 11
5 309.66 atmosphere 1000 720 > th dose independent rect. 14 18
6 309.72 atmosphere 1005 270 < th dose dependent rect. 18 3
13 310.33 atmosphere 1000 720 < th dose independent sin 13 NA
21 310.69 atmosphere 1000 720 < th dose independent rect. 18 5
25 310.84 atmosphere 1005 270 < th dose dependent rect. 17 5
29 310.91 atmosphere 1000 720 > th dose independent sin 12 NA
32 310.97 atmosphere 1000 720 > th dose independent rect. 4 21
68 312.00 atmosphere 1000 720 > th dose independent rect. 17 16
99 312.72 atmosphere 1000 720 > th dose independent rect. 13 12
107 312.86 atmosphere 1000 720 > th dose independent rect. 21 19
120 313.14 atmosphere 1000 720 > th dose independent rect. 11 22
144 313.54 atmosphere 1005 720 < th dose dependent rect. 21 1
150 313.64 atmosphere 1000 720 > th dose independent rect. 14 9
159 313.72 atmosphere 1005 720 < th dose dependent rect. 10 13
174 313.94 atmosphere 1005 720 < th dose dependent sin 17 NA
216 314.27 atmosphere 1005 270 < th dose dependent rect. 16 14
218 314.29 atmosphere 1000 720 > th dose independent rect. 20 23
252 314.59 humidity 80 14400 < th dose dependent rect. 22 11
260 314.63 atmosphere 1000 720 < th dose independent no NA NA
272 314.72 temperature 30 1440 < th dose independent rect. 10 1
273 314.74 atmosphere 1000 720 > th dose independent no NA NA
280 314.77 temperature 30 1440 > th dose independent rect. 10 1
299 314.93 temperature 30 1440 < th dose independent rect. 20 15
305 314.94 atmosphere 1000 720 < th dose independent rect. 3 23
316 315.01 atmosphere 1000 720 < th dose independent rect. 1 23
323 315.04 atmosphere 1000 720 < th dose independent rect. 23 23
328 315.07 temperature 30 1440 < th dose independent rect. 4 7
334 315.10 atmosphere 1005 270 < th dose dependent sin 14 NA
343 315.18 atmosphere 1000 90 < th dose independent rect. 17 15
355 315.29 atmosphere 1000 90 < th dose independent rect. 19 13
370 315.38 atmosphere 1000 10 < th dose independent rect. 18 15
374 315.40 atmosphere 1000 30 < th dose independent sin 9 NA
379 315.42 temperature 30 1440 < th dose independent rect. 1 10
392 315.46 atmosphere 1000 90 < th dose independent rect. 21 11
408 315.58 temperature 25 30 > th dose dependent rect. 5 1
432 315.73 temperature 30 1440 > th dose independent sin 7 NA
454 315.86 atmosphere 1000 720 < th dose independent rect. 21 1
466 315.90 atmosphere 1005 30 > th dose dependent rect. 3 1
470 315.93 atmosphere 1000 90 < th dose independent rect. 17 20
502 316.09 atmosphere 1000 720 > th dose independent rect. 17 23
510 316.14 atmosphere 1000 90 < th dose dependent rect. 4 3
538 316.22 atmosphere 1000 720 > th dose independent rect. 4 14
544 316.26 atmosphere 1000 90 < th dose independent rect. 4 3
547 316.27 atmosphere 1005 1440 < th dose independent rect. 7 1
550 316.28 atmosphere 1000 720 > th dose independent rect. 23 17
566 316.34 temperature 30 1440 < th dose independent sin 7 NA
567 316.34 atmosphere 1000 90 < th dose independent rect. 19 18
568 316.35 atmosphere 1005 1440 > th dose independent rect. 6 1
593 316.46 atmosphere 1000 270 < th dose independent rect. 21 9
606 316.51 temperature 30 1440 > th dose dependent rect. 10 2
613 316.55 atmosphere 1000 10 < th dose independent rect. 5 1
623 316.55 atmosphere 1000 10 < th dose dependent rect. 5 1
700 316.69 atmosphere 1000 10 < th dose independent rect. 18 19
711 316.73 atmosphere 1000 90 < th dose independent rect. 21 16
725 316.77 atmosphere 1000 10 > th dose independent sin 7 NA
774 316.90 temperature 30 1440 > th dose independent rect. 8 7
805 316.91 temperature 30 1440 > th dose dependent sin 7 NA
822 316.95 wind 3 14400 > th dose dependent rect. 11 1