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Os01g0251100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 50S ribosomal protein L3-2, chloroplast precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.85 (0.0249) R2 : 0.704
β1 : 1.08 (0.0902) R2dD : 0.0972 R2D : 0.0593
β2 : 1.21 (0.0741) R2dC : 0.241 R2C : 0.438
β3 : -1.45 (0.103) R2dE : 0.19 R2E : 0.357
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.386 (0.055) R2dN8 : 0.0471 R2N8 : -0.0362
σ : 0.46
deviance : 97.45
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_____
C
peak time of C : 16.3
E
wheather : atmosphere
threshold : 1003
memory length : 41
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.74
open length of G : 5.07

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.76 0.46 9.85 1.11 1.23 -1.41 0.927 0.785 0.389 16.4 1003 33 3.85 5.01
96.28 0.457 9.85 1.08 1.21 -1.43 0.67 -- 0.378 16.4 1003 34 3.8 5.04
97.43 0.46 9.85 1.09 1.21 -1.45 -- 0.144 0.387 16.3 1003 39 3.77 5.05
97.45 0.46 9.85 1.08 1.21 -1.45 -- -- 0.386 16.3 1003 41 3.74 5.07
146.32 0.563 9.85 1 -- -1.88 -- -0.0622 0.421 -- 996.8 34 3.6 5.88
130.87 0.536 9.92 1.01 1.81 -- 0.796 -- 0.15 17 -- -- -- --
132.48 0.539 9.92 1.01 1.82 -- -- -- 0.154 17 -- -- -- --
135.51 0.542 9.87 1.21 -- -1.63 -- -- 0.393 -- 983.1 83 2.75 6.08
128.18 0.527 9.87 -- 1.25 -1.36 -- -- 0.27 16.4 1003 48 3.82 4.98
305.74 0.817 9.9 0.947 -- -- -- -- 0.108 -- -- -- -- --
159.5 0.591 9.94 -- 1.8 -- -- -- 0.0416 17 -- -- -- --
163.02 0.595 9.87 -- -- -1.69 -- -- 0.287 -- 986.6 103 2.6 6.02
329.39 0.847 9.92 -- -- -- -- -- 0.00291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.59 wind 5.0 270 < th dose independent rect. 3 3
2 98.64 atmosphere 1000.0 10 > th dose dependent rect. 4 5
4 98.93 wind 5.0 270 < th dose independent rect. 4 1
5 99.09 wind 5.0 30 < th dose independent rect. 4 5
6 99.58 atmosphere 1000.0 270 > th dose dependent rect. 4 1
10 99.93 wind 5.0 270 < th dose independent rect. 2 5
13 100.07 radiation 30.0 90 < th dose independent rect. 3 6
14 100.15 precipitation 0.1 30 < th dose independent rect. 4 5
15 100.15 precipitation 0.1 30 < th dose dependent rect. 4 5
17 100.17 temperature 10.0 30 > th dose independent rect. 4 5
19 100.17 temperature 30.0 30 < th dose independent rect. 4 5
20 100.17 humidity 50.0 30 > th dose independent rect. 4 5
22 100.17 atmosphere 995.0 30 > th dose independent rect. 4 5
23 100.17 atmosphere 1015.0 30 < th dose independent rect. 4 5
24 100.17 temperature 10.0 30 > th dose independent rect. 9 19
26 100.32 precipitation 0.1 270 < th dose independent rect. 3 3
27 100.32 precipitation 0.1 270 < th dose dependent rect. 3 3
29 100.38 wind 9.0 30 < th dose independent rect. 9 19
30 100.43 atmosphere 995.0 30 > th dose independent rect. 9 19
47 100.66 precipitation 0.1 30 < th dose independent rect. 9 19
48 100.66 precipitation 0.1 30 < th dose dependent rect. 9 19
52 100.76 atmosphere 1010.0 270 < th dose independent rect. 3 3
53 100.83 radiation 1.0 270 < th dose dependent rect. 4 1
55 100.85 temperature 10.0 1440 > th dose independent rect. 5 5
58 100.85 atmosphere 995.0 1440 > th dose independent rect. 5 5
59 100.85 atmosphere 1015.0 1440 < th dose independent rect. 5 5
60 100.85 temperature 10.0 1440 > th dose independent rect. 10 19
65 100.90 wind 9.0 270 < th dose independent rect. 6 21
67 100.97 temperature 10.0 270 > th dose independent rect. 3 3
69 100.97 temperature 30.0 270 < th dose independent rect. 3 3
70 100.97 humidity 50.0 270 > th dose independent rect. 3 3
73 100.97 atmosphere 995.0 270 > th dose independent rect. 3 3
75 100.97 radiation 20.0 270 < th dose independent rect. 3 3
78 100.97 temperature 10.0 270 > th dose independent rect. 6 21
79 100.98 radiation 40.0 270 < th dose dependent rect. 3 3
81 101.00 precipitation 0.1 270 < th dose independent rect. 4 1
83 101.00 precipitation 0.1 270 < th dose dependent rect. 4 1
94 101.36 temperature 10.0 270 > th dose independent rect. 4 1
96 101.36 temperature 30.0 270 < th dose independent rect. 4 1
97 101.36 humidity 50.0 270 > th dose independent rect. 4 1
100 101.36 atmosphere 995.0 270 > th dose independent rect. 4 1
101 101.36 atmosphere 1010.0 270 < th dose independent rect. 4 1
103 101.36 radiation 20.0 270 < th dose independent rect. 4 1
107 101.36 temperature 10.0 270 > th dose independent rect. 5 23
109 101.38 radiation 40.0 270 < th dose dependent rect. 4 1
113 101.47 temperature 10.0 30 > th dose dependent rect. 4 5
115 101.53 radiation 1.0 270 < th dose independent rect. 4 1
126 101.75 wind 9.0 30 < th dose dependent rect. 4 5
132 101.88 precipitation 0.1 270 < th dose independent rect. 2 5
133 101.88 precipitation 0.1 270 < th dose dependent rect. 2 5
140 102.08 precipitation 0.1 270 < th dose independent rect. 6 21
141 102.08 precipitation 0.1 270 < th dose dependent rect. 6 21
144 102.16 wind 1.0 270 > th dose independent rect. 3 3
145 102.17 radiation 30.0 270 < th dose dependent rect. 2 6
153 102.28 wind 1.0 270 > th dose independent rect. 2 5
154 102.28 wind 9.0 270 < th dose independent rect. 7 19
155 102.29 humidity 90.0 10 < th dose independent rect. 9 6
157 102.31 wind 9.0 270 < th dose dependent rect. 3 3
163 102.38 temperature 10.0 270 > th dose dependent rect. 3 3
165 102.39 temperature 10.0 270 > th dose independent rect. 2 5
170 102.39 atmosphere 995.0 270 > th dose independent rect. 2 5
171 102.39 atmosphere 1015.0 270 < th dose independent rect. 2 5
173 102.39 temperature 10.0 270 > th dose independent rect. 7 19
185 102.50 wind 9.0 270 < th dose independent rect. 5 23
188 102.54 radiation 1.0 10 > th dose independent rect. 9 6
195 102.61 wind 9.0 270 < th dose dependent rect. 4 1
222 102.76 temperature 10.0 10 > th dose independent rect. 9 6
224 102.76 atmosphere 995.0 10 > th dose independent rect. 9 6
225 102.76 atmosphere 1015.0 10 < th dose independent rect. 9 6
226 102.76 precipitation 0.1 10 < th dose independent rect. 9 6
227 102.76 temperature 10.0 10 > th dose independent rect. 15 18
228 102.76 precipitation 0.1 10 < th dose dependent rect. 9 6
230 102.81 radiation 1.0 270 < th dose independent rect. 3 9
235 102.83 atmosphere 995.0 270 > th dose independent rect. 6 21
240 102.85 temperature 15.0 90 > th dose independent rect. 8 7
243 102.88 humidity 50.0 270 > th dose dependent rect. 4 1
256 102.92 temperature 10.0 10 > th dose dependent rect. 9 6
258 102.94 wind 1.0 30 > th dose independent rect. 9 6
263 102.99 temperature 10.0 1440 > th dose independent rect. 10 6
266 102.99 temperature 10.0 1440 > th dose independent rect. 16 18
275 103.05 humidity 50.0 270 > th dose dependent rect. 3 3
279 103.09 wind 9.0 10 < th dose independent rect. 9 6
280 103.09 precipitation 0.1 10 < th dose independent rect. 15 18
282 103.09 precipitation 0.1 10 < th dose dependent rect. 15 18
285 103.14 wind 9.0 30 < th dose independent rect. 15 18
290 103.18 radiation 10.0 270 < th dose independent rect. 17 10
298 103.24 radiation 20.0 270 < th dose dependent rect. 17 10
300 103.26 radiation 40.0 90 < th dose independent rect. 4 15
339 103.51 atmosphere 1000.0 270 > th dose independent rect. 18 8
355 103.56 radiation 40.0 30 < th dose independent rect. 15 18
385 103.67 temperature 10.0 270 > th dose dependent rect. 4 1
388 103.67 radiation 1.0 270 < th dose dependent rect. 3 9
389 103.68 atmosphere 1015.0 10 < th dose independent rect. 15 18
413 103.77 humidity 50.0 30 > th dose independent rect. 9 19
431 103.85 wind 9.0 270 < th dose independent rect. 18 9
434 103.87 temperature 10.0 270 > th dose independent rect. 18 9
435 103.87 humidity 50.0 270 > th dose independent rect. 18 9
439 103.87 temperature 10.0 270 > th dose independent rect. 3 15
440 103.87 atmosphere 1015.0 270 < th dose independent rect. 3 15
449 103.92 wind 1.0 30 > th dose independent rect. 4 5
467 104.04 atmosphere 1005.0 30 > th dose independent rect. 4 5
492 104.09 precipitation 0.1 270 < th dose independent rect. 3 15
494 104.09 precipitation 0.1 270 < th dose dependent rect. 3 15
501 104.22 radiation 40.0 10 < th dose independent rect. 4 16
513 104.35 radiation 1.0 270 > th dose independent rect. 9 1
524 104.44 wind 1.0 270 > th dose independent rect. 1 7
525 104.46 temperature 30.0 270 < th dose independent rect. 18 9
527 104.47 temperature 15.0 270 > th dose independent rect. 9 1
540 104.55 wind 9.0 270 < th dose independent rect. 3 15
562 104.63 atmosphere 1005.0 270 > th dose independent rect. 4 1
566 104.66 atmosphere 1005.0 270 > th dose independent rect. 3 3
577 104.74 humidity 50.0 270 > th dose independent rect. 6 21
587 104.79 temperature 10.0 270 > th dose dependent rect. 9 1
607 104.88 precipitation 0.1 270 < th dose independent rect. 18 9
609 104.88 precipitation 0.1 270 < th dose dependent rect. 18 9
614 104.93 atmosphere 995.0 10 > th dose independent rect. 15 18
650 105.10 wind 9.0 270 < th dose independent rect. 9 1
651 105.10 precipitation 0.1 270 < th dose independent rect. 9 1
652 105.10 humidity 50.0 270 > th dose independent rect. 7 19
653 105.10 precipitation 0.1 270 < th dose dependent rect. 9 1
673 105.17 humidity 50.0 270 > th dose independent rect. 9 1
685 105.21 atmosphere 995.0 270 > th dose independent rect. 9 1
686 105.21 atmosphere 1015.0 270 < th dose independent rect. 9 1
690 105.21 temperature 10.0 270 > th dose independent rect. 10 23
717 105.27 humidity 50.0 10 > th dose independent rect. 15 18
736 105.32 atmosphere 1015.0 30 < th dose independent rect. 9 19
823 105.53 atmosphere 995.0 30 > th dose dependent rect. 9 19
875 105.74 humidity 50.0 30 > th dose independent rect. 9 6
878 105.80 temperature 30.0 270 < th dose dependent rect. 4 1
913 105.95 humidity 50.0 270 > th dose independent rect. 7 6
988 106.27 wind 9.0 270 < th dose dependent rect. 9 1
997 106.32 radiation 40.0 90 < th dose dependent rect. 4 15
998 106.33 wind 1.0 270 > th dose independent rect. 9 1