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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0249100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Expansin Os-EXPA3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0743) R2 : 0.471
β1 : -5.72 (0.456) R2dD : 0.991 R2D : -0.374
β2 : 1.95 (0.141) R2dC : 0.226 R2C : 0.0607
β3 : 1.81 (0.188) R2dE : 0.181 R2E : -0.221
β4 : -2.76 (0.616) R2dD*C : 0.0234 R2D*C : -0.0781
β5 : -9.97 (1.26) R2dD*E : 0.379 R2D*E : -0.708
γ1 : -1.34 (0.162) R2dN8 : 0.206 R2N8 : -0.164
σ : 1.03
deviance : 478.75
__
_____
C
peak time of C : 7.5
E
wheather : temperature
threshold : 26.8
memory length : 2887
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
478.75 1.03 4.55 -5.72 1.95 1.81 -2.76 -9.97 -1.34 7.5 26.8 2887 -- --
519.82 1.06 4.3 -4.11 1.76 2.13 -2.94 -- -1.04 7.33 18.7 23303 -- --
499.43 1.04 4.54 -5.73 1.95 1.78 -- -9.95 -1.31 7.38 26.9 2920 -- --
533.36 1.08 4.27 -4.33 1.86 2.28 -- -- -1.01 7.12 18.8 23279 -- --
700.27 1.23 4.54 -5.28 -- 1.62 -- -8.64 -1.13 -- 26.9 2928 -- --
583.46 1.13 4.12 -2.15 1.85 -- -2.48 -- -0.306 7.21 -- -- -- --
599.63 1.15 4.12 -2.21 1.85 -- -- -- -0.302 7.09 -- -- -- --
712.2 1.24 4.29 -4.26 -- 2.32 -- -- -0.866 -- 14.7 47520 -- --
724.9 1.26 4.07 -- 1.82 0.369 -- -- -0.0857 7.07 18.8 23279 -- --
780.04 1.31 4.16 -2.17 -- -- -- -- -0.269 -- -- -- -- --
728.22 1.26 4.06 -- 1.83 -- -- -- -0.0563 7.17 -- -- -- --
739.99 1.27 4.12 -- -- -1.69 -- -- -0.15 -- 35.1 46738 -- --
904.61 1.4 4.1 -- -- -- -- -- -0.028 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 479.89 humidity 90 43200 > th dose dependent rect. 5 2
2 480.27 humidity 90 43200 > th dose dependent rect. 4 6
7 481.22 humidity 90 43200 > th dose dependent rect. 3 9
19 482.71 humidity 90 43200 > th dose independent rect. 5 1
21 482.76 humidity 90 43200 > th dose dependent sin 3 NA
25 483.08 radiation 1 43200 > th dose independent rect. 18 1
41 483.39 humidity 90 43200 > th dose independent rect. 3 9
45 483.64 humidity 90 43200 > th dose independent rect. 4 7
52 484.29 wind 5 43200 < th dose independent rect. 14 1
53 484.34 wind 5 43200 < th dose independent rect. 13 3
60 484.68 humidity 90 43200 < th dose independent rect. 22 1
75 485.30 wind 5 43200 > th dose independent rect. 14 1
81 485.39 wind 5 43200 > th dose independent rect. 13 3
83 485.40 humidity 90 43200 > th dose independent rect. 22 1
84 485.44 humidity 90 43200 > th dose independent sin 3 NA
97 486.14 temperature 25 4320 > th dose independent rect. 17 1
102 486.27 radiation 1 43200 < th dose independent rect. 18 7
103 486.27 radiation 1 43200 < th dose independent rect. 18 9
114 486.37 radiation 1 43200 < th dose independent rect. 18 1
116 486.42 radiation 1 43200 < th dose independent rect. 18 3
140 487.42 humidity 90 43200 < th dose independent sin 3 NA
150 487.63 humidity 90 43200 < th dose independent rect. 4 7
162 487.91 temperature 25 4320 < th dose independent rect. 17 1
169 488.08 wind 1 43200 > th dose dependent rect. 13 1
172 488.11 humidity 90 43200 < th dose independent rect. 3 9
177 488.23 humidity 90 43200 > th dose independent rect. 2 21
181 488.32 wind 5 43200 > th dose independent rect. 12 7
190 488.43 humidity 90 43200 < th dose independent rect. 5 21
204 488.61 wind 9 43200 < th dose dependent rect. 13 1
216 488.74 humidity 90 14400 < th dose independent rect. 2 1
231 488.94 radiation 1 43200 > th dose independent rect. 5 4
232 488.95 radiation 1 43200 < th dose independent rect. 5 4
237 488.99 humidity 90 43200 > th dose dependent rect. 16 21
263 489.16 humidity 90 14400 > th dose independent rect. 22 7
272 489.22 humidity 90 43200 > th dose dependent rect. 19 23
280 489.28 humidity 90 43200 > th dose dependent rect. 19 19
285 489.30 humidity 90 43200 > th dose dependent no NA NA
294 489.35 wind 1 43200 > th dose independent rect. 2 1
295 489.35 radiation 1 4320 < th dose dependent rect. 4 1
305 489.43 humidity 90 43200 < th dose independent rect. 2 21
307 489.44 radiation 1 43200 < th dose independent rect. 24 9
315 489.48 radiation 1 43200 < th dose independent rect. 3 6
448 490.22 humidity 90 43200 > th dose dependent rect. 11 23
459 490.30 humidity 90 43200 > th dose dependent rect. 7 23
467 490.34 radiation 1 43200 < th dose independent sin 8 NA
470 490.39 radiation 1 43200 > th dose independent sin 8 NA
494 490.60 humidity 60 43200 > th dose independent rect. 11 1
527 490.77 radiation 1 43200 < th dose dependent rect. 5 3
570 490.91 humidity 90 43200 > th dose independent rect. 17 21
572 490.92 humidity 90 43200 > th dose independent rect. 19 19
597 491.02 humidity 90 43200 > th dose independent rect. 22 16
602 491.02 radiation 1 43200 < th dose dependent rect. 24 8
610 491.04 humidity 90 43200 > th dose independent rect. 9 1
624 491.13 radiation 1 43200 < th dose dependent rect. 18 11
627 491.14 humidity 90 43200 > th dose independent rect. 22 23
648 491.26 wind 1 43200 < th dose dependent rect. 24 1
669 491.33 humidity 90 43200 > th dose independent rect. 22 20
678 491.37 humidity 90 43200 > th dose independent rect. 19 22
680 491.38 radiation 1 4320 < th dose dependent rect. 2 3
696 491.41 humidity 90 43200 < th dose independent rect. 9 1
706 491.46 radiation 1 43200 < th dose dependent rect. 18 7
707 491.46 radiation 1 43200 < th dose dependent rect. 18 9
723 491.50 radiation 1 43200 < th dose dependent rect. 18 1
740 491.55 radiation 1 43200 > th dose independent rect. 6 1
745 491.57 humidity 90 43200 > th dose independent no NA NA
760 491.62 radiation 1 43200 < th dose independent rect. 6 1
764 491.64 temperature 25 720 > th dose dependent rect. 22 1
814 491.93 radiation 1 43200 < th dose dependent sin 9 NA
817 491.95 humidity 90 14400 < th dose independent rect. 23 5
889 492.40 humidity 90 14400 < th dose independent rect. 24 3
893 492.43 humidity 90 43200 < th dose independent rect. 19 4
951 492.70 humidity 90 43200 < th dose independent rect. 22 23
954 492.72 humidity 90 14400 > th dose independent rect. 1 2
955 492.72 humidity 90 43200 > th dose independent rect. 8 23
956 492.72 humidity 90 43200 < th dose independent rect. 15 23
989 492.89 humidity 90 43200 > th dose independent rect. 11 23