Os01g0248900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Expansin Os-EXPA3.
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Os01g0248900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Expansin Os-EXPA3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.73 | 0.412 | 3.35 | 0.465 | 0.0162 | 0.0158 | -0.367 | 2.1 | -0.0426 | 22.3 | 9.979 | 4393 | -- | -- |
| 81.58 | 0.424 | 3.4 | 0.431 | 0.0667 | -0.081 | -0.299 | -- | -0.0799 | 22.7 | 19.63 | 3962 | -- | -- |
| 77.09 | 0.409 | 3.35 | 0.485 | 0.0152 | -0.0299 | -- | 2.06 | -0.0438 | 21.9 | 9.988 | 4229 | -- | -- |
| 80.42 | 0.418 | 3.4 | 0.443 | 0.0168 | -0.232 | -- | -- | -0.1 | 11.5 | 47.11 | 1045 | -- | -- |
| 77.11 | 0.409 | 3.35 | 0.487 | -- | -0.0326 | -- | 2.07 | -0.0441 | -- | 9.99 | 4229 | -- | -- |
| 81.88 | 0.424 | 3.4 | 0.432 | 0.00921 | -- | -0.319 | -- | -0.0815 | 22.1 | -- | -- | -- | -- |
| 82.27 | 0.425 | 3.4 | 0.445 | 0.0198 | -- | -- | -- | -0.0804 | 18.6 | -- | -- | -- | -- |
| 75.31 | 0.404 | 3.39 | 0.446 | -- | -0.622 | -- | -- | -0.0282 | -- | 60.83 | 1467 | -- | -- |
| 84.94 | 0.429 | 3.43 | -- | 0.0371 | -0.262 | -- | -- | -0.164 | 10.9 | 43.15 | 1072 | -- | -- |
| 82.29 | 0.424 | 3.4 | 0.445 | -- | -- | -- | -- | -0.0808 | -- | -- | -- | -- | -- |
| 87.5 | 0.438 | 3.41 | -- | 0.0158 | -- | -- | -- | -0.13 | 20.3 | -- | -- | -- | -- |
| 81.45 | 0.42 | 3.4 | -- | -- | -0.569 | -- | -- | -0.0567 | -- | 60.84 | 1443 | -- | -- |
| 87.51 | 0.437 | 3.41 | -- | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 3 | 74.96 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 4 | 75.06 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 5 | 75.09 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 9 | 75.13 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 11 | 75.16 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 15 | 75.19 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 17 | 75.19 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 23 | 75.21 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 28 | 75.22 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 29 | 75.23 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 32 | 75.25 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 57 | 75.30 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 63 | 75.31 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 65 | 75.31 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 70 | 75.32 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 95 | 75.36 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 142 | 75.44 | humidity | 90.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 155 | 75.45 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 162 | 75.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 169 | 75.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 181 | 75.49 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 182 | 75.49 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 192 | 75.50 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 197 | 75.51 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 202 | 75.51 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 204 | 75.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 206 | 75.52 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 228 | 75.54 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 233 | 75.55 | humidity | 90.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 237 | 75.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 272 | 75.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 273 | 75.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 279 | 75.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 281 | 75.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 291 | 75.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 294 | 75.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 295 | 75.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 299 | 75.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 300 | 75.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 305 | 75.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 325 | 75.64 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 346 | 75.66 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 352 | 75.67 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 355 | 75.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 362 | 75.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 371 | 75.68 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 374 | 75.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 376 | 75.68 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 409 | 75.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 422 | 75.70 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 432 | 75.71 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 441 | 75.71 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 450 | 75.72 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 476 | 75.73 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 500 | 75.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 517 | 75.75 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 533 | 75.75 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 561 | 75.77 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 575 | 75.77 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 617 | 75.79 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 618 | 75.79 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 651 | 75.79 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 657 | 75.80 | wind | 3.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 658 | 75.80 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 718 | 75.82 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 719 | 75.82 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 784 | 75.85 | temperature | 25.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 786 | 75.85 | temperature | 25.0 | 43200 | < th | dose independent | sin | 0 | NA |
| 787 | 75.85 | radiation | 1.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 788 | 75.85 | radiation | 1.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 854 | 75.86 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 982 | 75.89 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |