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Os01g0248800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.84 (0.0222) R2 : 0.653
β1 : -2.59 (0.107) R2dD : 1.28 R2D : -0.031
β2 : 0.566 (0.0446) R2dC : 0.124 R2C : 0.0282
β3 : 0.34 (0.0803) R2dE : 0.0206 R2E : -0.115
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.51 (0.346) R2dD*E : 0.421 R2D*E : -0.572
γ1 : -0.258 (0.0457) R2dN8 : 0.0484 R2N8 : -0.155
σ : 0.329
deviance : 49.8
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C
peak time of C : 3.83
E
wheather : temperature
threshold : 10.4
memory length : 4634
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.65 0.331 9.84 -2.6 0.564 0.345 0.231 -4.53 -0.259 3.78 10.74 4584 -- --
69.54 0.388 9.69 -1.67 0.56 0.568 0.202 -- -0.0654 3.67 11.94 9274 -- --
49.8 0.329 9.84 -2.59 0.566 0.34 -- -4.51 -0.258 3.83 10.4 4634 -- --
68.28 0.385 9.67 -1.6 0.561 0.584 -- -- 0.0103 4.01 10.06 5027 -- --
67.21 0.382 9.83 -2.58 -- 0.427 -- -4.38 -0.25 -- 10.91 4369 -- --
74 0.403 9.64 -1.32 0.568 -- 0.193 -- 0.128 3.78 -- -- -- --
74.11 0.403 9.64 -1.33 0.57 -- -- -- 0.127 3.82 -- -- -- --
84.1 0.427 9.67 -1.6 -- 0.653 -- -- 0.0125 -- 10.1 4085 -- --
90.31 0.443 9.55 -- 0.582 -0.892 -- -- 0.538 3.69 6.065 47520 -- --
91.99 0.448 9.64 -1.3 -- -- -- -- 0.142 -- -- -- -- --
120.43 0.513 9.61 -- 0.544 -- -- -- 0.274 3.85 -- -- -- --
100.47 0.467 9.54 -- -- -0.864 -- -- 0.622 -- 25.61 47520 -- --
136.72 0.546 9.61 -- -- -- -- -- 0.286 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.37 radiation 1.0 43200 > th dose independent rect. 11 1
2 43.39 radiation 40.0 43200 < th dose dependent rect. 1 4
3 43.40 radiation 1.0 43200 < th dose independent rect. 11 1
4 43.40 radiation 1.0 43200 < th dose dependent rect. 11 1
6 43.95 radiation 1.0 43200 < th dose dependent rect. 7 9
8 43.99 radiation 1.0 43200 > th dose independent rect. 10 3
9 44.00 radiation 40.0 43200 < th dose dependent rect. 23 6
13 44.06 radiation 1.0 43200 > th dose independent rect. 8 7
14 44.07 radiation 1.0 43200 > th dose independent rect. 9 5
16 44.07 radiation 40.0 43200 < th dose dependent rect. 20 9
17 44.08 radiation 1.0 43200 < th dose independent rect. 8 7
18 44.09 radiation 1.0 43200 < th dose independent rect. 10 3
20 44.12 radiation 1.0 43200 < th dose independent rect. 9 5
21 44.12 radiation 1.0 43200 < th dose dependent rect. 10 3
24 44.16 temperature 20.0 43200 > th dose independent rect. 8 1
31 44.19 temperature 20.0 43200 < th dose independent rect. 8 1
77 44.54 radiation 30.0 43200 < th dose independent rect. 1 6
88 44.57 radiation 1.0 43200 < th dose dependent rect. 6 4
105 44.67 temperature 20.0 43200 > th dose independent rect. 17 1
106 44.67 temperature 20.0 43200 < th dose independent rect. 17 2
108 44.68 temperature 20.0 43200 > th dose independent rect. 7 12
115 44.70 radiation 30.0 43200 < th dose independent rect. 20 11
116 44.70 temperature 20.0 43200 < th dose independent rect. 7 14
119 44.72 radiation 30.0 43200 < th dose independent rect. 23 8
154 44.87 radiation 1.0 43200 < th dose dependent rect. 15 1
173 44.93 temperature 25.0 43200 < th dose dependent rect. 9 3
187 44.97 temperature 20.0 43200 < th dose independent sin 22 NA
217 45.05 temperature 20.0 43200 > th dose independent sin 23 NA
219 45.05 wind 7.0 43200 < th dose independent rect. 23 1
225 45.05 radiation 1.0 43200 < th dose dependent rect. 6 1
237 45.07 humidity 90.0 43200 > th dose dependent rect. 10 2
279 45.17 wind 7.0 43200 > th dose independent rect. 23 1
309 45.24 radiation 10.0 43200 < th dose independent rect. 1 5
311 45.24 radiation 10.0 43200 < th dose independent rect. 18 12
327 45.26 radiation 10.0 43200 < th dose independent rect. 23 7
330 45.26 radiation 10.0 43200 < th dose independent rect. 21 9
363 45.33 radiation 30.0 43200 < th dose independent rect. 6 1
392 45.39 wind 9.0 43200 < th dose independent rect. 22 6
426 45.46 wind 7.0 43200 > th dose dependent rect. 23 1
427 45.46 temperature 20.0 43200 < th dose dependent rect. 23 1
449 45.52 humidity 90.0 43200 < th dose independent rect. 11 2
476 45.57 precipitation 0.1 43200 > th dose independent rect. 6 1
480 45.57 precipitation 0.1 43200 > th dose dependent rect. 6 1
547 45.66 humidity 90.0 43200 > th dose independent rect. 11 2
552 45.66 temperature 25.0 43200 < th dose dependent rect. 15 1
599 45.71 wind 7.0 43200 < th dose independent rect. 21 10
603 45.71 atmosphere 995.0 43200 < th dose dependent rect. 3 8
606 45.72 atmosphere 995.0 43200 < th dose independent rect. 5 7
607 45.72 wind 7.0 43200 > th dose independent rect. 21 10
611 45.72 temperature 20.0 43200 < th dose dependent rect. 2 1
620 45.73 temperature 25.0 43200 < th dose dependent sin 22 NA
691 45.79 temperature 20.0 43200 < th dose dependent sin 9 NA
711 45.80 atmosphere 995.0 43200 < th dose dependent rect. 2 12
794 45.86 wind 7.0 43200 > th dose independent rect. 21 15
864 45.90 wind 5.0 43200 > th dose dependent rect. 21 9
881 45.91 wind 7.0 43200 > th dose dependent rect. 21 15
918 45.94 precipitation 0.1 43200 > th dose dependent rect. 6 4
940 45.95 atmosphere 995.0 43200 < th dose dependent rect. 4 5
951 45.96 precipitation 0.1 43200 > th dose independent rect. 6 4