Os01g0248600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GINS complex, Psf2 component family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0248600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : GINS complex, Psf2 component family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.84 | 0.332 | 10 | 0.251 | 0.463 | 0.704 | -0.337 | 0.355 | 0.338 | 12.2 | 0.05912 | 95 | -- | -- |
| 49.89 | 0.329 | 10 | 0.29 | 0.474 | 0.726 | -0.654 | -- | 0.372 | 12.2 | 0.0254 | 101 | -- | -- |
| 49.86 | 0.329 | 10 | 0.239 | 0.465 | 0.709 | -- | 0.622 | 0.336 | 12.4 | 0.06 | 95 | -- | -- |
| 52.03 | 0.336 | 10 | 0.241 | 0.498 | 0.744 | -- | -- | 0.366 | 12.4 | 0.01008 | 103 | -- | -- |
| 53.1 | 0.339 | 10.1 | 0.301 | -- | 0.429 | -- | 0.617 | 0.367 | -- | 0.01 | 126 | -- | -- |
| 57.53 | 0.356 | 10.1 | 0.214 | 0.358 | -- | 0.765 | -- | 0.294 | 0.755 | -- | -- | -- | -- |
| 59.97 | 0.363 | 10.1 | 0.185 | 0.359 | -- | -- | -- | 0.289 | 1.07 | -- | -- | -- | -- |
| 55.03 | 0.346 | 10.1 | 0.337 | -- | 0.403 | -- | -- | 0.376 | -- | 0.05999 | 119 | -- | -- |
| 53.67 | 0.341 | 10 | -- | 0.547 | 0.772 | -- | -- | 0.333 | 12.4 | 0.07934 | 103 | -- | -- |
| 67.96 | 0.385 | 10 | 0.198 | -- | -- | -- | -- | 0.296 | -- | -- | -- | -- | -- |
| 60.86 | 0.365 | 10.1 | -- | 0.362 | -- | -- | -- | 0.269 | 1.09 | -- | -- | -- | -- |
| 55.47 | 0.347 | 10.1 | -- | -- | 0.371 | -- | -- | 0.291 | -- | 0.006871 | 121 | -- | -- |
| 69 | 0.388 | 10.1 | -- | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.27 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 5 | 39.39 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 12 | 39.91 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 17 | 40.56 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 43 | 42.03 | radiation | 1.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 57 | 42.45 | radiation | 10.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 68 | 42.75 | radiation | 1.0 | 90 | < th | dose independent | sin | 10 | NA |
| 69 | 42.79 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 97 | 43.12 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 100 | 43.18 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 101 | 43.18 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 114 | 43.23 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 120 | 43.30 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 126 | 43.38 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 128 | 43.40 | humidity | 60.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 134 | 43.43 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 4 |
| 145 | 43.43 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 149 | 43.48 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 152 | 43.50 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 154 | 43.50 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 157 | 43.50 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 158 | 43.50 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 159 | 43.50 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 179 | 43.87 | radiation | 1.0 | 90 | > th | dose independent | sin | 10 | NA |
| 180 | 43.87 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 182 | 43.93 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 184 | 43.96 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 186 | 43.99 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 10 |
| 188 | 44.01 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 189 | 44.02 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 10 |
| 245 | 44.27 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 247 | 44.28 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 269 | 44.39 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 277 | 44.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 306 | 44.57 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 20 |
| 307 | 44.57 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 309 | 44.57 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 330 | 44.67 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 331 | 44.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 1 |
| 332 | 44.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 348 | 44.77 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 350 | 44.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 352 | 44.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 353 | 44.77 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 356 | 44.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 357 | 44.77 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 358 | 44.77 | radiation | 20.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 362 | 44.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 389 | 44.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 392 | 44.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 15 |
| 393 | 44.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 398 | 44.90 | wind | 9.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 403 | 44.90 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 408 | 44.93 | temperature | 10.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 409 | 44.93 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 410 | 44.93 | humidity | 50.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 413 | 44.93 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 419 | 44.93 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 15 |
| 420 | 44.93 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 421 | 44.93 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 443 | 44.98 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 460 | 44.99 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 525 | 45.19 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 526 | 45.19 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 9 |
| 527 | 45.19 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 546 | 45.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 603 | 45.49 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 677 | 45.72 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 698 | 45.79 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 727 | 45.89 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 728 | 45.89 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 15 |
| 731 | 45.90 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 739 | 45.94 | humidity | 90.0 | 30 | < th | dose independent | rect. | 5 | 4 |
| 777 | 46.02 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 780 | 46.03 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 785 | 46.04 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 802 | 46.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 824 | 46.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 856 | 46.18 | humidity | 50.0 | 90 | > th | dose independent | rect. | 16 | 17 |
| 932 | 46.28 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 936 | 46.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 940 | 46.30 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 961 | 46.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 965 | 46.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |