Os01g0246700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 1.
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Os01g0246700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.34 | 0.489 | 10.1 | 3.14 | 1.31 | 0.0216 | 0.524 | 2.64 | 0.637 | 18.5 | 999 | 4326 | -- | -- |
| 110.81 | 0.49 | 10.1 | 3.04 | 1.3 | 0.587 | 0.525 | -- | 0.7 | 18.6 | 1004 | 13184 | -- | -- |
| 109.02 | 0.486 | 10.1 | 3.13 | 1.31 | 0.0222 | -- | 2.62 | 0.635 | 18.5 | 999 | 4327 | -- | -- |
| 111.36 | 0.491 | 10.1 | 3.02 | 1.3 | 0.595 | -- | -- | 0.704 | 18.6 | 1004 | 13202 | -- | -- |
| 198.3 | 0.656 | 10.1 | 3.1 | -- | 0.0591 | -- | 2.6 | 0.628 | -- | 998.9 | 4326 | -- | -- |
| 117.47 | 0.508 | 10.2 | 3.1 | 1.31 | -- | 0.524 | -- | 0.617 | 18.5 | -- | -- | -- | -- |
| 118.15 | 0.509 | 10.2 | 3.1 | 1.31 | -- | -- | -- | 0.618 | 18.5 | -- | -- | -- | -- |
| 199.55 | 0.658 | 10.1 | 2.98 | -- | 0.663 | -- | -- | 0.655 | -- | 1004 | 13591 | -- | -- |
| 191.94 | 0.645 | 10.4 | -- | 1.44 | 2.13 | -- | -- | -0.299 | 18.4 | 1016 | 47520 | -- | -- |
| 207.75 | 0.673 | 10.1 | 3.06 | -- | -- | -- | -- | 0.591 | -- | -- | -- | -- | -- |
| 370.79 | 0.901 | 10.2 | -- | 1.27 | -- | -- | -- | 0.273 | 18.7 | -- | -- | -- | -- |
| 279.47 | 0.779 | 10.3 | -- | -- | 2.09 | -- | -- | -0.253 | -- | 1016 | 47520 | -- | -- |
| 455.38 | 0.996 | 10.2 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.69 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 2 | 102.93 | temperature | 25.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 6 | 103.68 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 8 | 103.84 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 11 | 103.97 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 13 | 104.25 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 15 | 104.32 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 18 | 104.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 19 | 104.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 23 | 104.50 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 25 | 104.53 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 40 | 104.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 41 | 104.67 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 42 | 104.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 53 | 104.84 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 56 | 104.84 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 62 | 104.95 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 65 | 105.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 67 | 105.07 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 69 | 105.11 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 73 | 105.17 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 80 | 105.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 111 | 105.43 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 113 | 105.45 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 115 | 105.47 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 119 | 105.49 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 120 | 105.49 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 130 | 105.53 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 137 | 105.59 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 138 | 105.59 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 158 | 105.64 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 159 | 105.65 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 160 | 105.65 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 169 | 105.67 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 184 | 105.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 16 |
| 187 | 105.73 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 194 | 105.76 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 204 | 105.79 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 215 | 105.82 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 230 | 105.86 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 250 | 105.91 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 257 | 105.94 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 288 | 106.02 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 305 | 106.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 317 | 106.11 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 321 | 106.12 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 351 | 106.20 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 365 | 106.22 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 379 | 106.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 384 | 106.27 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 391 | 106.28 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 411 | 106.33 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 428 | 106.37 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 429 | 106.37 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 467 | 106.39 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 485 | 106.43 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 532 | 106.52 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 538 | 106.53 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 23 | 22 |
| 574 | 106.60 | wind | 1.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 615 | 106.67 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 630 | 106.70 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 10 |
| 640 | 106.71 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 683 | 106.77 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 684 | 106.77 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 685 | 106.77 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 706 | 106.79 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 732 | 106.82 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 6 |
| 772 | 106.85 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 820 | 106.92 | humidity | 80.0 | 90 | > th | dose independent | rect. | 23 | 18 |
| 847 | 106.94 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 852 | 106.95 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 865 | 106.96 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 887 | 107.00 | wind | 1.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 917 | 107.04 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 931 | 107.05 | humidity | 80.0 | 90 | > th | dose independent | rect. | 23 | 20 |
| 944 | 107.07 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 961 | 107.09 | temperature | 25.0 | 30 | > th | dose independent | rect. | 8 | 23 |