Os01g0245800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0245800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 299.48 | 0.813 | 3.06 | 0.362 | 0.273 | -0.396 | 1.7 | -1.25 | -0.333 | 2.67 | 90.18 | 8 | -- | -- |
| 305.21 | 0.82 | 3.05 | 0.251 | 0.213 | -0.369 | 0.688 | -- | -0.341 | 3.39 | 90.18 | 8 | -- | -- |
| 305.41 | 0.814 | 3.05 | 0.261 | 0.232 | -0.348 | -- | -0.414 | -0.343 | 3.41 | 90.76 | 6 | -- | -- |
| 306.46 | 0.815 | 3.05 | 0.222 | 0.206 | -0.349 | -- | -- | -0.343 | 3.82 | 90.43 | 6 | -- | -- |
| 306.29 | 0.82 | 3.04 | 0.26 | -- | -0.13 | -- | -0.873 | -0.274 | -- | 88.55 | 6 | -- | -- |
| 312.51 | 0.829 | 3.03 | 0.174 | 0.0595 | -- | -0.415 | -- | -0.255 | 14.4 | -- | -- | -- | -- |
| 313.04 | 0.829 | 3.03 | 0.163 | 0.0687 | -- | -- | -- | -0.258 | 11.9 | -- | -- | -- | -- |
| 308.05 | 0.817 | 3.04 | 0.21 | -- | -0.252 | -- | -- | -0.316 | -- | 90.25 | 7 | -- | -- |
| 307.74 | 0.817 | 3.05 | -- | 0.198 | -0.332 | -- | -- | -0.363 | 3.87 | 90.41 | 6 | -- | -- |
| 313.34 | 0.827 | 3.03 | 0.161 | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
| 313.74 | 0.829 | 3.03 | -- | 0.0667 | -- | -- | -- | -0.276 | 11.8 | -- | -- | -- | -- |
| 309.18 | 0.819 | 3.05 | -- | -- | -0.24 | -- | -- | -0.336 | -- | 90.63 | 6 | -- | -- |
| 314.02 | 0.827 | 3.03 | -- | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 282.05 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 8 | 1 |
| 3 | 282.10 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 11 | 285.18 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 13 |
| 18 | 287.22 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 19 | 287.22 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 20 | 287.78 | radiation | 20.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 53 | 288.70 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 68 | 290.06 | wind | 7.0 | 90 | > th | dose dependent | rect. | 13 | 2 |
| 69 | 290.11 | wind | 3.0 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 72 | 290.22 | wind | 3.0 | 10 | < th | dose dependent | rect. | 19 | 2 |
| 101 | 290.92 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 115 | 291.22 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 5 |
| 116 | 291.23 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 3 |
| 134 | 291.55 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 7 |
| 135 | 291.57 | wind | 7.0 | 90 | > th | dose independent | rect. | 13 | 2 |
| 138 | 291.77 | wind | 3.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 207 | 293.52 | wind | 3.0 | 90 | < th | dose independent | rect. | 18 | 3 |
| 208 | 293.61 | humidity | 90.0 | 10 | < th | dose independent | rect. | 19 | 17 |
| 240 | 294.05 | humidity | 90.0 | 10 | < th | dose independent | rect. | 19 | 11 |
| 269 | 294.58 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 278 | 294.64 | wind | 3.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 290 | 294.93 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 294 | 294.95 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 317 | 295.16 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 19 | 14 |
| 388 | 295.81 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 19 | 2 |
| 390 | 295.83 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 19 | 3 |
| 402 | 295.97 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 19 | 3 |
| 429 | 296.26 | radiation | 20.0 | 10 | > th | dose independent | sin | 11 | NA |
| 434 | 296.33 | wind | 3.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 435 | 296.34 | radiation | 20.0 | 10 | < th | dose independent | sin | 11 | NA |
| 496 | 297.08 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 18 | 4 |
| 509 | 297.09 | humidity | 90.0 | 10 | < th | dose independent | sin | 10 | NA |
| 525 | 297.24 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 534 | 297.35 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 546 | 297.47 | radiation | 10.0 | 90 | < th | dose independent | rect. | 21 | 13 |
| 574 | 297.76 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 13 |
| 575 | 297.76 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 19 | 13 |
| 580 | 297.81 | wind | 1.0 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 591 | 297.89 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 21 | 20 |
| 592 | 297.90 | radiation | 30.0 | 30 | < th | dose independent | rect. | 19 | 13 |
| 630 | 298.09 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 12 | 3 |
| 633 | 298.14 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 635 | 298.15 | wind | 3.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 717 | 298.54 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 719 | 298.56 | humidity | 90.0 | 10 | > th | dose independent | sin | 10 | NA |
| 730 | 298.64 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 741 | 298.69 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 747 | 298.71 | wind | 1.0 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 775 | 298.84 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 776 | 298.85 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 23 | 9 |
| 782 | 298.87 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 20 |
| 806 | 298.95 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 21 |
| 807 | 298.96 | wind | 5.0 | 30 | < th | dose independent | rect. | 19 | 13 |
| 833 | 299.04 | temperature | 25.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 836 | 299.06 | wind | 7.0 | 30 | < th | dose independent | rect. | 8 | 11 |
| 839 | 299.07 | temperature | 25.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 840 | 299.07 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 23 | 9 |
| 842 | 299.07 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 21 | 13 |
| 850 | 299.10 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 19 |
| 865 | 299.16 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 873 | 299.19 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 888 | 299.22 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 889 | 299.22 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 900 | 299.26 | atmosphere | 1005.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 902 | 299.27 | temperature | 20.0 | 30 | > th | dose independent | rect. | 8 | 11 |
| 979 | 299.41 | atmosphere | 1005.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 989 | 299.43 | wind | 9.0 | 10 | > th | dose independent | rect. | 13 | 1 |