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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0244400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1618 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0139) R2 : 0.00264
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0322 (0.0293) R2dN8 : 0.00341 R2N8 : 0.00264
σ : 0.262
deviance : 31.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.87 0.257 3.08 0.146 0.038 0.14 0.132 0.798 -0.0371 7.72 88.18 5888 -- --
30.78 0.258 3.07 0.112 0.0521 0.178 0.124 -- -0.0498 7.74 94.99 6585 -- --
29.91 0.255 3.08 0.149 0.0407 0.147 -- 0.799 -0.0372 6.68 88.12 5865 -- --
30.76 0.258 3.08 0.106 0.0653 0.185 -- -- -0.0648 6.77 103 5100 -- --
30 0.255 3.08 0.15 -- 0.14 -- 0.796 -0.0364 -- 88 5855 -- --
31.16 0.262 3.07 0.0912 0.0379 -- 0.125 -- -0.0221 7.58 -- -- -- --
31.19 0.262 3.07 0.0935 0.0433 -- -- -- -0.0227 5.95 -- -- -- --
30.9 0.259 3.08 0.107 -- 0.164 -- -- -0.0543 -- 89 5728 -- --
31.05 0.26 3.08 -- 0.0635 0.172 -- -- -0.0729 6.76 114.9 5101 -- --
31.28 0.261 3.07 0.0948 -- -- -- -- -0.0217 -- -- -- -- --
31.42 0.262 3.07 -- 0.0447 -- -- -- -0.0331 5.85 -- -- -- --
31.18 0.26 3.08 -- -- 0.165 -- -- -0.068 -- 120.3 4346 -- --
31.52 0.262 3.07 -- -- -- -- -- -0.0322 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.63 temperature 25.0 30 > th dose independent rect. 20 3
4 28.03 temperature 25.0 90 > th dose dependent rect. 20 3
5 28.13 radiation 20.0 43200 < th dose dependent rect. 23 1
7 28.15 atmosphere 1005.0 30 > th dose dependent rect. 20 3
22 28.43 temperature 25.0 30 > th dose independent rect. 22 1
24 28.44 wind 9.0 1440 < th dose independent rect. 23 1
26 28.44 temperature 10.0 1440 > th dose independent rect. 23 1
29 28.44 temperature 30.0 1440 < th dose independent rect. 23 1
33 28.44 humidity 50.0 1440 > th dose independent rect. 23 1
43 28.44 atmosphere 995.0 1440 > th dose independent rect. 23 1
44 28.44 radiation 1.0 1440 < th dose independent rect. 23 1
64 28.44 temperature 10.0 1440 > th dose independent rect. 24 23
73 28.46 temperature 25.0 30 > th dose dependent rect. 22 1
74 28.47 wind 3.0 30 < th dose independent rect. 22 1
76 28.48 humidity 80.0 30 > th dose independent rect. 22 1
77 28.48 atmosphere 1005.0 30 > th dose dependent rect. 22 1
80 28.50 humidity 90.0 30 < th dose independent rect. 22 1
83 28.51 atmosphere 1005.0 30 > th dose independent rect. 22 1
85 28.52 wind 1.0 30 > th dose independent rect. 22 1
87 28.52 wind 5.0 30 < th dose dependent rect. 22 1
93 28.53 temperature 10.0 30 > th dose independent rect. 22 1
95 28.53 temperature 30.0 30 < th dose independent rect. 22 1
96 28.53 humidity 50.0 30 > th dose independent rect. 22 1
99 28.53 atmosphere 995.0 30 > th dose independent rect. 22 1
101 28.53 atmosphere 1010.0 30 < th dose independent rect. 22 1
103 28.53 radiation 1.0 30 < th dose independent rect. 22 1
108 28.53 precipitation 0.1 30 < th dose independent rect. 22 1
109 28.53 temperature 10.0 30 > th dose independent rect. 23 23
110 28.53 humidity 50.0 30 > th dose dependent rect. 22 1
113 28.53 radiation 1.0 30 < th dose dependent rect. 22 1
118 28.53 precipitation 0.1 30 < th dose dependent rect. 22 1
119 28.54 atmosphere 1000.0 30 > th dose independent rect. 23 23
123 28.55 radiation 20.0 43200 < th dose dependent rect. 21 1
136 28.59 atmosphere 1015.0 30 < th dose dependent rect. 22 1
138 28.60 temperature 10.0 1440 > th dose independent rect. 21 1
141 28.60 temperature 30.0 1440 < th dose independent rect. 21 1
145 28.60 humidity 50.0 1440 > th dose independent rect. 21 1
151 28.60 atmosphere 995.0 1440 > th dose independent rect. 21 1
152 28.60 radiation 1.0 1440 < th dose independent rect. 21 1
172 28.60 temperature 10.0 1440 > th dose independent rect. 22 23
175 28.60 humidity 90.0 30 < th dose dependent rect. 22 1
176 28.61 precipitation 0.1 1440 < th dose independent rect. 23 1
177 28.61 precipitation 0.1 1440 < th dose dependent rect. 23 1
179 28.62 wind 1.0 30 > th dose dependent rect. 22 1
182 28.63 wind 3.0 30 > th dose independent rect. 20 1
185 28.64 temperature 25.0 30 > th dose independent rect. 20 1
186 28.64 humidity 80.0 30 > th dose independent rect. 20 1
189 28.64 atmosphere 1005.0 30 > th dose dependent rect. 20 1
199 28.68 atmosphere 1005.0 30 > th dose independent rect. 20 1
202 28.68 temperature 30.0 30 < th dose dependent rect. 22 1
206 28.69 humidity 90.0 30 < th dose independent rect. 20 1
208 28.69 wind 1.0 30 > th dose dependent rect. 20 1
217 28.71 humidity 50.0 30 > th dose dependent rect. 20 1
222 28.72 wind 5.0 30 < th dose independent rect. 20 1
225 28.72 temperature 10.0 30 > th dose independent rect. 20 1
228 28.72 temperature 30.0 30 < th dose independent rect. 20 1
229 28.72 humidity 50.0 30 > th dose independent rect. 20 1
232 28.72 atmosphere 995.0 30 > th dose independent rect. 20 1
234 28.72 atmosphere 1010.0 30 < th dose independent rect. 20 1
236 28.72 radiation 1.0 30 < th dose independent rect. 20 1
241 28.72 precipitation 0.1 30 < th dose independent rect. 20 1
243 28.72 temperature 10.0 30 > th dose independent rect. 21 23
244 28.72 radiation 1.0 30 < th dose dependent rect. 20 1
249 28.72 precipitation 0.1 30 < th dose dependent rect. 20 1
253 28.74 wind 9.0 1440 < th dose independent rect. 21 1
254 28.75 wind 9.0 30 < th dose dependent rect. 20 1
263 28.78 precipitation 0.1 10 < th dose independent rect. 23 23
267 28.78 precipitation 0.1 10 < th dose dependent rect. 23 23
269 28.79 temperature 25.0 90 > th dose dependent rect. 20 8
292 28.81 wind 9.0 30 < th dose independent rect. 21 23
304 28.84 atmosphere 1015.0 30 < th dose dependent rect. 20 1
308 28.86 humidity 90.0 30 < th dose dependent rect. 20 1
310 28.87 temperature 30.0 30 < th dose dependent rect. 20 1
317 28.92 humidity 90.0 30 < th dose independent rect. 20 3
330 28.99 wind 9.0 30 < th dose independent rect. 23 23
341 29.06 atmosphere 1005.0 30 > th dose independent rect. 20 3
342 29.06 precipitation 0.1 10 < th dose independent rect. 21 23
344 29.06 precipitation 0.1 10 < th dose dependent rect. 21 23
416 29.21 humidity 50.0 30 > th dose independent rect. 23 23
423 29.25 humidity 80.0 30 > th dose independent rect. 20 3
445 29.35 atmosphere 995.0 30 > th dose independent rect. 21 23
475 29.46 wind 5.0 30 < th dose independent rect. 20 3
486 29.52 precipitation 0.1 10 < th dose independent rect. 23 21
487 29.52 humidity 80.0 14400 < th dose dependent rect. 5 4
488 29.52 precipitation 0.1 10 < th dose dependent rect. 23 21
492 29.54 atmosphere 1005.0 30 > th dose independent rect. 23 8
499 29.56 atmosphere 995.0 30 > th dose independent rect. 23 21
511 29.59 temperature 10.0 30 > th dose dependent rect. 23 8
516 29.61 atmosphere 1005.0 720 > th dose independent rect. 23 1
523 29.62 precipitation 0.1 10 < th dose independent rect. 23 8
526 29.62 precipitation 0.1 10 < th dose dependent rect. 23 8
528 29.63 wind 1.0 30 > th dose independent rect. 20 3
541 29.65 temperature 10.0 30 > th dose dependent rect. 23 21
548 29.67 humidity 70.0 14400 > th dose independent rect. 8 1
550 29.67 atmosphere 1005.0 30 > th dose independent rect. 23 12
552 29.68 wind 9.0 30 < th dose dependent rect. 20 3
557 29.70 precipitation 0.1 1440 < th dose independent rect. 21 3
558 29.70 humidity 70.0 14400 > th dose independent rect. 5 4
562 29.70 humidity 70.0 14400 > th dose independent rect. 24 9
567 29.70 precipitation 0.1 1440 < th dose dependent rect. 21 3
569 29.71 temperature 10.0 1440 > th dose independent rect. 21 3
572 29.71 temperature 30.0 1440 < th dose independent rect. 21 3
577 29.71 humidity 50.0 1440 > th dose independent rect. 21 3
583 29.71 atmosphere 995.0 1440 > th dose independent rect. 21 3
584 29.71 radiation 1.0 1440 < th dose independent rect. 21 3
610 29.71 temperature 10.0 1440 > th dose independent rect. 24 21
617 29.71 radiation 30.0 1440 < th dose dependent rect. 21 3
619 29.71 radiation 10.0 4320 < th dose dependent rect. 21 3
626 29.71 atmosphere 995.0 30 > th dose dependent rect. 23 21
640 29.73 precipitation 0.1 30 < th dose independent rect. 20 3
645 29.73 precipitation 0.1 30 < th dose dependent rect. 20 3
646 29.74 temperature 10.0 30 > th dose independent rect. 20 3
648 29.74 temperature 30.0 30 < th dose independent rect. 20 3
649 29.74 humidity 50.0 30 > th dose independent rect. 20 3
653 29.74 atmosphere 1010.0 30 < th dose independent rect. 20 3
655 29.74 radiation 1.0 30 < th dose independent rect. 20 3
662 29.74 temperature 10.0 30 > th dose independent rect. 23 21
665 29.74 radiation 1.0 30 < th dose dependent rect. 20 3
671 29.74 temperature 25.0 720 > th dose dependent rect. 23 10
673 29.75 humidity 90.0 30 < th dose independent rect. 7 16
677 29.76 humidity 70.0 14400 < th dose independent rect. 8 1
681 29.76 wind 9.0 30 < th dose independent rect. 23 21
683 29.76 radiation 40.0 30 < th dose dependent rect. 23 12
693 29.78 wind 1.0 30 > th dose independent rect. 7 16
694 29.78 precipitation 0.1 30 < th dose independent rect. 7 16
698 29.78 precipitation 0.1 30 < th dose dependent rect. 7 16
714 29.80 temperature 10.0 1440 > th dose independent rect. 24 8
717 29.80 temperature 30.0 1440 < th dose independent rect. 24 8
721 29.80 humidity 50.0 1440 > th dose independent rect. 24 8
726 29.80 atmosphere 995.0 1440 > th dose independent rect. 24 8
727 29.80 atmosphere 1005.0 30 > th dose independent rect. 23 10
728 29.80 temperature 10.0 1440 > th dose independent rect. 8 16
734 29.81 wind 3.0 720 > th dose independent rect. 11 1
749 29.81 radiation 10.0 10 < th dose independent rect. 23 11
760 29.82 humidity 60.0 720 > th dose independent rect. 11 1
768 29.83 humidity 70.0 14400 < th dose independent rect. 6 3
779 29.83 wind 1.0 14400 < th dose dependent rect. 6 1
789 29.84 atmosphere 995.0 30 > th dose dependent rect. 23 8
791 29.85 wind 9.0 30 < th dose independent rect. 23 8
792 29.85 temperature 10.0 30 > th dose independent rect. 23 8
794 29.85 temperature 30.0 30 < th dose independent rect. 23 8
795 29.85 humidity 50.0 30 > th dose independent rect. 23 8
799 29.85 radiation 20.0 30 < th dose independent rect. 23 8
803 29.85 humidity 80.0 30 > th dose independent rect. 23 11
804 29.85 temperature 10.0 30 > th dose independent rect. 7 16
806 29.85 atmosphere 1015.0 30 < th dose independent rect. 7 16
812 29.85 atmosphere 995.0 720 > th dose dependent rect. 23 1
828 29.87 wind 9.0 30 < th dose independent rect. 7 16
844 29.89 temperature 10.0 720 > th dose dependent rect. 23 1
845 29.89 humidity 50.0 30 > th dose dependent rect. 20 3
853 29.90 temperature 30.0 30 < th dose independent rect. 23 23
879 29.93 humidity 50.0 30 > th dose independent rect. 23 21
899 29.94 radiation 30.0 30 < th dose independent rect. 23 12
908 29.94 humidity 50.0 4320 > th dose dependent rect. 23 14
915 29.95 humidity 60.0 4320 > th dose dependent rect. 2 8
919 29.96 humidity 60.0 4320 > th dose independent rect. 11 1
930 29.96 radiation 40.0 30 < th dose dependent rect. 23 8
932 29.96 temperature 10.0 30 > th dose dependent rect. 23 10
948 29.97 temperature 25.0 720 > th dose independent rect. 24 9
963 29.97 radiation 10.0 10 < th dose independent rect. 23 21
969 29.97 humidity 50.0 4320 > th dose dependent rect. 3 6
972 29.97 humidity 50.0 4320 > th dose dependent rect. 2 11
976 29.98 precipitation 0.1 1440 < th dose independent rect. 21 1
980 29.98 temperature 30.0 720 < th dose independent rect. 15 8
984 29.98 atmosphere 995.0 720 > th dose independent rect. 23 16
985 29.98 wind 1.0 30 > th dose independent rect. 23 23
987 29.98 humidity 70.0 4320 < th dose dependent rect. 12 1
988 29.98 precipitation 0.1 1440 < th dose dependent rect. 21 1
1000 29.98 atmosphere 995.0 30 > th dose dependent rect. 23 12