Os01g0243800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0243800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.08 | 0.649 | 11.4 | -1.16 | 1.77 | 1.89 | 0.409 | -3.75 | -1.01 | 19.3 | 25.2 | 694 | -- | -- |
| 194.29 | 0.649 | 11.3 | -0.577 | 1.73 | 1.68 | -0.231 | -- | -0.881 | 19.6 | 25.42 | 597 | -- | -- |
| 191.36 | 0.644 | 11.4 | -1.07 | 1.75 | 1.88 | -- | -3.13 | -0.984 | 19.4 | 25.22 | 665 | -- | -- |
| 193.82 | 0.648 | 11.3 | -0.583 | 1.79 | 1.59 | -- | -- | -0.883 | 19.5 | 25 | 624 | -- | -- |
| 290.79 | 0.794 | 11.4 | -1.74 | -- | 3.45 | -- | -5.54 | -1.23 | -- | 24.8 | 604 | -- | -- |
| 240.97 | 0.728 | 11.3 | -0.246 | 2.44 | -- | 0.474 | -- | -0.756 | 19.3 | -- | -- | -- | -- |
| 241.58 | 0.728 | 11.3 | -0.256 | 2.44 | -- | -- | -- | -0.755 | 19.3 | -- | -- | -- | -- |
| 303.3 | 0.811 | 11.3 | -0.857 | -- | 2.99 | -- | -- | -1.05 | -- | 24.61 | 569 | -- | -- |
| 201.94 | 0.662 | 11.3 | -- | 1.84 | 1.47 | -- | -- | -0.806 | 19.5 | 25.2 | 612 | -- | -- |
| 558.6 | 1.1 | 11.3 | -0.297 | -- | -- | -- | -- | -0.796 | -- | -- | -- | -- | -- |
| 243.31 | 0.73 | 11.3 | -- | 2.44 | -- | -- | -- | -0.727 | 19.3 | -- | -- | -- | -- |
| 321.67 | 0.835 | 11.3 | -- | -- | 2.85 | -- | -- | -0.929 | -- | 24.8 | 563 | -- | -- |
| 560.93 | 1.11 | 11.3 | -- | -- | -- | -- | -- | -0.763 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 15 |
| 43 | 186.62 | temperature | 15 | 270 | > th | dose dependent | sin | 17 | NA |
| 44 | 186.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 50 | 187.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 11 |
| 79 | 189.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 87 | 189.75 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 94 | 190.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 6 |
| 100 | 190.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 104 | 190.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 111 | 190.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 114 | 190.53 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 15 |
| 122 | 190.63 | temperature | 25 | 720 | > th | dose dependent | sin | 20 | NA |
| 140 | 190.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 182 | 191.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 197 | 191.20 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 220 | 191.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 283 | 191.99 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 19 |
| 333 | 192.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 375 | 192.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 4 |
| 378 | 193.00 | radiation | 40 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 404 | 193.33 | radiation | 40 | 720 | > th | dose dependent | sin | 12 | NA |
| 459 | 193.75 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 540 | 194.76 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 546 | 194.85 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 7 |
| 556 | 194.94 | humidity | 70 | 270 | > th | dose independent | rect. | 12 | 12 |
| 561 | 194.95 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 572 | 195.01 | humidity | 70 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 584 | 195.16 | radiation | 40 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 602 | 195.18 | radiation | 40 | 720 | > th | dose dependent | no | NA | NA |
| 741 | 195.20 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 742 | 195.20 | radiation | 1 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 748 | 195.26 | radiation | 1 | 270 | < th | dose independent | rect. | 16 | 8 |
| 749 | 195.26 | radiation | 40 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 751 | 195.28 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 753 | 195.29 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 756 | 195.30 | radiation | 40 | 720 | > th | dose dependent | sin | 4 | NA |
| 780 | 195.34 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 794 | 195.44 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 795 | 195.45 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 801 | 195.48 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 7 |
| 853 | 195.77 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 855 | 195.80 | temperature | 30 | 270 | < th | dose dependent | sin | 18 | NA |
| 866 | 195.90 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 880 | 195.97 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 884 | 195.98 | humidity | 50 | 270 | > th | dose dependent | rect. | 10 | 14 |
| 917 | 196.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 8 |
| 930 | 196.14 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 936 | 196.16 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 952 | 196.21 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 967 | 196.27 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 976 | 196.31 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 3 |