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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0243700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-1,3-glucanase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.26 (0.046) R2 : 0.548
β1 : -2.92 (0.171) R2dD : 0.348 R2D : 0.288
β2 : 1.07 (0.111) R2dC : 0.0947 R2C : 0.0684
β3 : -0.533 (0.259) R2dE : 0.0065 R2E : 0.00114
β4 : -2.54 (0.481) R2dD*C : 0.0285 R2D*C : 0.0277
β5 : 5.93 (0.828) R2dD*E : 0.0662 R2D*E : -0.0173
γ1 : -0.986 (0.0993) R2dN8 : 0.151 R2N8 : 0.0115
σ : 0.816
deviance : 301.68
__
_____
C
peak time of C : 7.9
E
wheather : wind
threshold : 3.172
memory length : 1329
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
301.68 0.816 4.26 -2.92 1.07 -0.533 -2.54 5.93 -0.986 7.9 3.172 1329 -- --
329.45 0.845 4.41 -2.96 1.11 -0.591 -2.18 -- -1.15 7.82 4.499 4966 -- --
319.67 0.833 4.26 -3.01 1.08 -0.423 -- 5.7 -0.986 7.64 3.349 1352 -- --
341.68 0.861 4.4 -2.77 1.14 -0.697 -- -- -1.14 7.61 4.672 4964 -- --
380.77 0.914 4.35 -3.17 -- 0.727 -- 1.42 -0.888 -- 3.389 1380 -- --
335.25 0.858 4.36 -2.95 1.02 -- -2.1 -- -0.944 7.63 -- -- -- --
347.52 0.873 4.36 -3 1.03 -- -- -- -0.942 7.44 -- -- -- --
359.39 0.883 4.35 -3.21 -- 1.38 -- -- -0.703 -- 2.884 484 -- --
502.93 1.04 4.27 -- 1.11 -2.1 -- -- -0.937 7.89 24.53 6050 -- --
403.88 0.939 4.39 -2.99 -- -- -- -- -0.925 -- -- -- -- --
585.36 1.13 4.29 -- 1 -- -- -- -0.607 7.64 -- -- -- --
461.95 1 4.26 -- -- -3.19 -- -- -0.292 -- 10.1 46000 -- --
639.37 1.18 4.31 -- -- -- -- -- -0.594 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 292.30 atmosphere 1005 14400 > th dose independent rect. 18 1
2 292.51 atmosphere 1005 14400 < th dose independent rect. 18 1
4 293.08 wind 3 1440 < th dose dependent rect. 6 6
6 293.41 wind 1 4320 < th dose independent rect. 4 3
8 293.44 wind 3 1440 < th dose independent rect. 6 4
9 293.75 wind 3 1440 < th dose dependent rect. 6 4
11 293.95 humidity 90 14400 < th dose independent rect. 3 2
19 294.61 wind 3 1440 < th dose independent rect. 4 8
22 294.83 wind 3 1440 < th dose independent rect. 8 1
24 294.89 wind 3 1440 > th dose independent rect. 6 4
27 294.99 wind 1 4320 > th dose independent rect. 4 3
28 295.05 wind 7 43200 > th dose independent rect. 18 2
46 295.50 wind 1 4320 < th dose dependent rect. 4 3
49 295.59 wind 3 1440 < th dose dependent rect. 8 1
50 295.60 wind 5 4320 > th dose independent rect. 9 1
52 295.62 humidity 70 43200 > th dose dependent rect. 6 1
74 296.27 wind 3 1440 > th dose independent rect. 4 8
76 296.34 atmosphere 1005 14400 > th dose independent rect. 14 7
108 296.84 wind 7 43200 > th dose dependent rect. 18 2
109 296.85 wind 7 43200 < th dose independent rect. 18 2
110 296.85 radiation 10 4320 > th dose independent rect. 17 14
122 297.11 humidity 70 43200 > th dose dependent rect. 18 4
123 297.14 atmosphere 1005 14400 > th dose independent rect. 14 2
127 297.24 wind 1 14400 < th dose dependent rect. 23 5
132 297.34 humidity 70 43200 > th dose dependent rect. 5 4
134 297.39 wind 3 1440 < th dose dependent sin 4 NA
138 297.56 humidity 70 43200 > th dose dependent rect. 19 2
180 298.10 wind 1 14400 < th dose independent rect. 22 6
184 298.14 temperature 20 14400 < th dose dependent rect. 11 1
188 298.17 atmosphere 1005 14400 > th dose independent sin 18 NA
201 298.33 wind 1 43200 > th dose independent sin 14 NA
213 298.43 radiation 30 4320 > th dose independent rect. 15 17
214 298.46 atmosphere 1005 14400 > th dose independent rect. 9 11
227 298.55 atmosphere 1005 14400 < th dose independent rect. 9 11
229 298.56 wind 7 270 < th dose dependent rect. 19 18
251 298.71 temperature 20 14400 < th dose dependent rect. 6 7
271 298.85 humidity 80 43200 < th dose independent rect. 17 6
282 298.90 atmosphere 1005 14400 < th dose independent rect. 15 1
302 299.05 atmosphere 1005 14400 < th dose independent sin 19 NA
340 299.24 wind 1 14400 < th dose dependent rect. 13 18
394 299.49 humidity 80 43200 < th dose independent rect. 16 8
396 299.49 wind 7 43200 > th dose dependent rect. 16 4
417 299.55 humidity 80 43200 > th dose independent rect. 5 6
437 299.64 wind 1 1440 > th dose dependent rect. 3 7
447 299.73 wind 9 43200 < th dose independent rect. 16 4
457 299.77 wind 3 1440 < th dose dependent rect. 2 20
472 299.83 humidity 80 43200 < th dose independent rect. 19 2
480 299.85 wind 1 43200 < th dose independent sin 15 NA
484 299.85 wind 3 1440 < th dose dependent rect. 2 16
485 299.86 wind 3 1440 < th dose dependent rect. 2 18
513 300.00 humidity 80 43200 > th dose independent rect. 17 6
546 300.13 humidity 90 14400 > th dose independent rect. 4 1
553 300.15 wind 1 1440 > th dose dependent rect. 8 1
599 300.31 wind 1 1440 > th dose dependent rect. 5 5
604 300.33 wind 7 43200 < th dose independent rect. 16 12
624 300.40 wind 7 43200 < th dose independent rect. 16 8
633 300.42 wind 7 43200 > th dose independent rect. 16 11
641 300.44 wind 7 43200 > th dose independent rect. 16 8
642 300.44 wind 7 43200 < th dose independent rect. 15 14
649 300.47 wind 1 14400 < th dose dependent rect. 18 14
659 300.50 wind 1 43200 > th dose independent rect. 16 13
665 300.51 wind 1 14400 < th dose dependent rect. 20 12
685 300.56 wind 3 1440 < th dose dependent rect. 17 19
690 300.58 humidity 70 43200 < th dose independent rect. 22 10
691 300.58 wind 7 43200 > th dose independent rect. 15 14
702 300.61 radiation 20 4320 > th dose dependent rect. 15 17
708 300.64 wind 9 14400 > th dose dependent rect. 15 8
721 300.66 wind 1 43200 < th dose dependent rect. 5 22
743 300.72 wind 1 43200 > th dose independent rect. 16 11
751 300.76 humidity 80 43200 > th dose independent rect. 18 4
760 300.78 wind 1 43200 > th dose independent rect. 23 4
765 300.78 wind 9 14400 > th dose dependent rect. 14 12
778 300.81 wind 1 14400 < th dose dependent sin 11 NA
784 300.84 wind 3 1440 < th dose independent sin 4 NA
785 300.84 wind 1 43200 > th dose independent rect. 14 15
791 300.85 wind 5 14400 > th dose independent rect. 5 18
822 300.92 wind 5 14400 < th dose independent rect. 5 18
866 301.01 humidity 80 43200 > th dose independent rect. 6 4
867 301.01 humidity 70 43200 > th dose independent rect. 22 10
921 301.11 wind 9 14400 > th dose dependent sin 15 NA
951 301.16 humidity 80 43200 < th dose independent sin 16 NA
957 301.16 humidity 60 43200 > th dose dependent rect. 5 20
958 301.17 humidity 80 43200 > th dose independent rect. 21 1
969 301.18 radiation 10 4320 > th dose dependent rect. 17 1
977 301.18 humidity 60 43200 > th dose dependent rect. 15 9
993 301.20 wind 1 43200 < th dose independent rect. 14 15