FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0243300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.39 (0.0495) R2 : 0.613
β1 : -3.94 (0.183) R2dD : 0.423 R2D : 0.195
β2 : 1.92 (0.156) R2dC : 0.225 R2C : -0.0998
β3 : 1.31 (0.121) R2dE : 0.177 R2E : -0.191
β4 : -4.56 (0.648) R2dD*C : 0.0846 R2D*C : -0.129
β5 : -3.2 (0.534) R2dD*E : 0.0612 R2D*E : -0.157
γ1 : -1.64 (0.106) R2dN8 : 0.278 R2N8 : 0.0548
σ : 0.926
deviance : 388.56
__
_____
C
peak time of C : 22.3
E
wheather : humidity
threshold : 92
memory length : 91
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.02
open length of G : 15.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
388.56 0.926 4.39 -3.94 1.92 1.31 -4.56 -3.2 -1.64 22.3 92 91 4.02 15.4
414.06 0.948 4.38 -3.78 1.84 1.23 -1.69 -- -1.58 22.1 91 140 4.01 14.7
424.62 0.96 4.37 -3.74 1.84 1.31 -- -0.624 -1.56 22.5 90.05 140 3.99 14.7
426.01 0.961 4.38 -3.71 1.86 1.3 -- -- -1.56 22.5 90.56 139 4.02 14.7
430.17 0.966 4.29 -3.94 -- 1.34 -- -3.15 -1.46 -- 90 613 4.65 17.5
435.2 0.978 4.33 -3.73 1.38 -- -2.97 -- -1.41 19 -- -- -- --
458.31 1 4.34 -3.68 1.37 -- -- -- -1.42 19 -- -- -- --
450.38 0.988 4.26 -3.6 -- 1.88 -- -- -1.47 -- 92.98 686 4.19 17.8
785.47 1.31 4.33 -- 1.97 1.43 -- -- -1.22 22.6 93.01 132 4.58 14.2
557.67 1.1 4.31 -3.7 -- -- -- -- -1.44 -- -- -- -- --
814.48 1.34 4.25 -- 1.42 -- -- -- -1.01 18.8 -- -- -- --
790.3 1.31 4.25 -- -- 2.21 -- -- -1.2 -- 93.13 722 3.7 17.9
919.54 1.42 4.22 -- -- -- -- -- -1.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 398.36 humidity 60.0 10 > th dose dependent rect. 10 20
12 400.59 radiation 1.0 270 < th dose dependent rect. 18 20
13 400.66 humidity 50.0 270 > th dose dependent rect. 7 22
16 400.84 wind 1.0 14400 < th dose independent rect. 1 3
20 401.57 humidity 90.0 90 < th dose independent rect. 4 15
22 401.86 humidity 90.0 10 < th dose independent rect. 6 14
25 402.03 atmosphere 1005.0 30 > th dose dependent rect. 4 7
26 402.14 temperature 15.0 90 > th dose independent rect. 6 13
33 402.53 radiation 1.0 270 < th dose dependent rect. 5 23
40 402.95 wind 1.0 14400 > th dose independent rect. 1 3
41 403.29 temperature 20.0 720 < th dose dependent rect. 8 1
45 403.35 atmosphere 1005.0 270 > th dose dependent rect. 4 3
47 403.43 humidity 60.0 10 > th dose dependent rect. 7 23
52 403.77 humidity 90.0 10 < th dose dependent rect. 17 16
55 404.18 humidity 60.0 10 > th dose dependent rect. 20 21
56 404.21 temperature 20.0 270 < th dose dependent rect. 8 11
64 404.83 radiation 1.0 270 < th dose independent rect. 18 20
65 404.84 temperature 20.0 720 < th dose dependent rect. 7 6
66 404.84 temperature 10.0 30 > th dose dependent rect. 6 14
72 405.01 temperature 20.0 720 < th dose dependent rect. 7 4
87 405.36 temperature 20.0 270 < th dose dependent rect. 7 13
98 405.54 temperature 20.0 1440 > th dose independent rect. 8 5
99 405.55 radiation 1.0 270 < th dose independent rect. 5 23
103 405.62 temperature 20.0 1440 < th dose independent rect. 8 5
106 405.68 wind 1.0 43200 > th dose independent rect. 7 1
115 405.88 humidity 60.0 10 > th dose dependent rect. 18 23
125 406.00 temperature 20.0 270 < th dose independent rect. 8 11
126 406.02 atmosphere 1005.0 270 > th dose dependent rect. 2 6
138 406.23 atmosphere 1015.0 270 < th dose dependent rect. 13 10
140 406.29 temperature 20.0 270 < th dose independent rect. 8 9
144 406.33 humidity 90.0 14400 < th dose independent rect. 2 4
156 406.46 atmosphere 1005.0 10 > th dose dependent rect. 6 5
157 406.46 atmosphere 1005.0 90 > th dose dependent rect. 1 9
160 406.51 atmosphere 1005.0 10 > th dose independent rect. 6 5
168 406.62 atmosphere 1005.0 10 > th dose dependent rect. 1 10
186 406.79 wind 1.0 43200 < th dose independent rect. 5 4
203 407.06 wind 1.0 43200 < th dose independent rect. 7 1
222 407.29 humidity 80.0 10 > th dose independent rect. 11 19
225 407.31 atmosphere 995.0 720 > th dose independent rect. 9 21
228 407.36 humidity 60.0 10 > th dose dependent rect. 20 17
236 407.41 precipitation 0.1 720 < th dose independent rect. 19 23
237 407.41 precipitation 0.1 720 < th dose dependent rect. 19 23
239 407.45 atmosphere 1000.0 30 > th dose independent rect. 6 14
246 407.53 atmosphere 1015.0 720 < th dose dependent rect. 12 6
248 407.54 wind 1.0 43200 < th dose independent rect. 24 9
258 407.66 radiation 1.0 720 < th dose dependent rect. 18 1
262 407.68 wind 1.0 14400 < th dose dependent rect. 2 2
288 407.98 humidity 50.0 10 > th dose dependent rect. 20 10
295 408.05 humidity 90.0 90 < th dose independent rect. 4 5
304 408.13 wind 1.0 14400 < th dose independent rect. 1 5
305 408.13 atmosphere 1005.0 90 > th dose independent rect. 11 12
308 408.21 atmosphere 1015.0 720 < th dose independent rect. 21 21
311 408.27 atmosphere 1005.0 90 > th dose independent rect. 6 3
313 408.29 wind 1.0 43200 > th dose independent rect. 5 4
327 408.45 atmosphere 995.0 720 > th dose independent rect. 9 12
329 408.47 wind 5.0 43200 > th dose dependent rect. 18 2
333 408.49 humidity 90.0 4320 > th dose independent rect. 12 1
337 408.55 temperature 15.0 270 > th dose independent rect. 4 14
339 408.57 humidity 80.0 10 < th dose dependent sin 11 NA
343 408.61 radiation 1.0 720 > th dose independent rect. 17 16
347 408.64 atmosphere 1015.0 720 < th dose independent rect. 21 12
365 408.88 atmosphere 1005.0 270 > th dose dependent rect. 11 10
373 408.97 temperature 20.0 10 > th dose dependent rect. 23 10
381 409.03 temperature 20.0 4320 > th dose independent rect. 12 4
391 409.12 radiation 10.0 30 < th dose independent rect. 20 10
394 409.15 wind 1.0 43200 < th dose independent rect. 3 6
396 409.16 precipitation 0.1 30 < th dose independent rect. 6 14
397 409.16 humidity 80.0 90 < th dose dependent sin 12 NA
398 409.16 precipitation 0.1 30 < th dose dependent rect. 6 14
401 409.18 atmosphere 1005.0 90 > th dose independent rect. 11 10
406 409.22 temperature 20.0 30 > th dose dependent rect. 1 8
411 409.26 humidity 90.0 270 < th dose independent rect. 4 3
412 409.27 precipitation 0.1 720 < th dose independent rect. 3 15
414 409.27 precipitation 0.1 720 < th dose dependent rect. 3 15
425 409.36 temperature 20.0 4320 < th dose dependent rect. 11 6
426 409.38 radiation 1.0 270 > th dose independent rect. 6 1
436 409.47 radiation 40.0 30 < th dose dependent rect. 20 10
440 409.52 temperature 10.0 30 > th dose independent rect. 20 10
441 409.52 temperature 30.0 30 < th dose independent rect. 20 10
442 409.52 humidity 50.0 30 > th dose independent rect. 20 10
445 409.52 atmosphere 995.0 30 > th dose independent rect. 20 10
451 409.52 atmosphere 1015.0 30 < th dose independent rect. 6 14
453 409.53 wind 1.0 43200 > th dose independent rect. 1 8
455 409.55 temperature 10.0 1440 > th dose independent rect. 21 10
458 409.55 temperature 30.0 1440 < th dose independent rect. 21 10
462 409.55 humidity 50.0 1440 > th dose independent rect. 21 10
467 409.55 atmosphere 995.0 1440 > th dose independent rect. 21 10
468 409.55 radiation 40.0 1440 < th dose independent rect. 21 10
472 409.55 temperature 10.0 1440 > th dose independent rect. 7 14
475 409.56 temperature 15.0 720 > th dose independent rect. 6 1
500 409.67 wind 9.0 10 < th dose independent rect. 20 10
514 409.74 wind 1.0 10 > th dose independent rect. 6 14
522 409.80 temperature 20.0 4320 < th dose independent rect. 12 4
526 409.85 wind 1.0 14400 > th dose independent rect. 1 5
531 409.88 precipitation 0.1 30 < th dose independent rect. 20 10
532 409.88 precipitation 0.1 30 < th dose dependent rect. 20 10
533 409.89 temperature 15.0 720 > th dose independent rect. 6 3
536 409.91 radiation 10.0 1440 > th dose independent rect. 14 2
537 409.91 radiation 1.0 43200 < th dose dependent rect. 21 1
538 409.91 atmosphere 995.0 720 > th dose dependent rect. 9 11
550 409.98 precipitation 0.1 720 < th dose independent rect. 21 21
551 409.98 precipitation 0.1 720 < th dose dependent rect. 21 21
560 410.04 temperature 20.0 1440 < th dose dependent rect. 6 14
577 410.15 atmosphere 1005.0 10 > th dose dependent rect. 12 11
578 410.17 humidity 80.0 90 < th dose dependent rect. 17 1
586 410.19 humidity 90.0 10 < th dose dependent rect. 15 20
588 410.20 atmosphere 1005.0 30 > th dose independent rect. 4 7
593 410.21 humidity 90.0 4320 > th dose dependent rect. 12 1
625 410.41 radiation 10.0 1440 > th dose independent rect. 14 16
639 410.45 radiation 1.0 4320 < th dose dependent rect. 21 1
652 410.48 atmosphere 1005.0 720 > th dose independent rect. 10 9
654 410.49 wind 7.0 43200 < th dose independent rect. 18 2
667 410.57 wind 9.0 30 < th dose independent rect. 6 14
679 410.62 humidity 80.0 1440 < th dose independent rect. 11 1
689 410.65 atmosphere 1005.0 90 < th dose independent rect. 15 6
691 410.65 atmosphere 995.0 720 > th dose independent rect. 15 15
695 410.66 humidity 50.0 270 > th dose dependent rect. 8 13
696 410.67 temperature 20.0 90 > th dose independent rect. 6 3
710 410.76 atmosphere 1005.0 720 > th dose independent rect. 10 7
725 410.83 atmosphere 1005.0 270 > th dose independent rect. 4 3
727 410.83 humidity 50.0 270 > th dose dependent rect. 8 8
737 410.90 atmosphere 1005.0 720 < th dose independent rect. 11 7
741 410.93 radiation 1.0 720 < th dose independent rect. 24 21
744 410.93 humidity 60.0 10 > th dose dependent rect. 14 23
745 410.94 atmosphere 995.0 720 > th dose dependent rect. 9 6
752 410.96 atmosphere 995.0 720 > th dose dependent rect. 18 1
755 410.97 humidity 90.0 30 < th dose independent rect. 2 18
776 411.05 radiation 1.0 90 > th dose independent rect. 17 16
778 411.07 atmosphere 1005.0 720 < th dose independent rect. 13 4
804 411.14 atmosphere 995.0 720 > th dose independent rect. 7 23
820 411.21 radiation 1.0 720 < th dose dependent rect. 24 21
828 411.26 humidity 50.0 270 > th dose independent rect. 7 23
829 411.26 humidity 60.0 10 > th dose dependent no NA NA
843 411.33 radiation 10.0 1440 > th dose independent sin 16 NA
844 411.33 atmosphere 1005.0 720 < th dose independent rect. 14 1
861 411.38 radiation 1.0 270 > th dose independent rect. 12 23
862 411.38 wind 9.0 14400 > th dose dependent rect. 4 1
866 411.40 atmosphere 1015.0 720 < th dose independent rect. 3 15
872 411.43 humidity 60.0 10 > th dose dependent rect. 18 12
882 411.46 radiation 1.0 720 < th dose dependent rect. 18 3
931 411.60 atmosphere 1005.0 90 < th dose independent rect. 15 8
935 411.62 wind 7.0 43200 < th dose independent rect. 15 6
946 411.66 humidity 60.0 10 > th dose dependent rect. 14 16
959 411.71 atmosphere 995.0 720 > th dose dependent rect. 9 8
964 411.72 radiation 1.0 270 > th dose independent rect. 10 23
965 411.72 wind 7.0 4320 > th dose dependent rect. 6 4
976 411.77 radiation 1.0 270 > th dose independent rect. 18 13
987 411.79 wind 7.0 43200 < th dose independent rect. 15 2
988 411.79 temperature 25.0 30 > th dose independent rect. 1 8