Os01g0242500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D-tyrosyl-tRNA(Tyr) deacylase family protein.
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Os01g0242500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D-tyrosyl-tRNA(Tyr) deacylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.72 | 0.403 | 8.37 | -3.03 | 0.817 | -1.99 | -0.568 | 1.08 | -0.78 | 4.16 | 30.47 | 263 | -- | -- |
| 74.33 | 0.402 | 8.35 | -2.84 | 0.815 | -1.96 | -0.304 | -- | -0.755 | 3.91 | 29.24 | 230 | -- | -- |
| 74.36 | 0.402 | 8.36 | -2.93 | 0.84 | -2.01 | -- | 0.546 | -0.751 | 3.9 | 30.53 | 219 | -- | -- |
| 74.58 | 0.402 | 8.35 | -2.84 | 0.825 | -1.96 | -- | -- | -0.752 | 3.83 | 29.38 | 217 | -- | -- |
| 80.38 | 0.418 | 8.38 | -3.03 | -- | -1.72 | -- | 0.988 | -0.783 | -- | 27.94 | 1237 | -- | -- |
| 125.89 | 0.526 | 8.27 | -2.35 | 0.218 | -- | -0.482 | -- | -0.351 | 3.56 | -- | -- | -- | -- |
| 126.6 | 0.527 | 8.26 | -2.34 | 0.214 | -- | -- | -- | -0.349 | 3.32 | -- | -- | -- | -- |
| 81.09 | 0.419 | 8.36 | -2.88 | -- | -1.81 | -- | -- | -0.753 | -- | 26.8 | 1250 | -- | -- |
| 261.71 | 0.758 | 8.23 | -- | 0.431 | -0.949 | -- | -- | -0.201 | 2.69 | 53.15 | 22 | -- | -- |
| 129.19 | 0.531 | 8.26 | -2.33 | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
| 271.27 | 0.77 | 8.21 | -- | 0.168 | -- | -- | -- | -0.0877 | 3.34 | -- | -- | -- | -- |
| 268.09 | 0.765 | 8.22 | -- | -- | -0.502 | -- | -- | -0.169 | -- | 25.1 | 59 | -- | -- |
| 272.87 | 0.771 | 8.21 | -- | -- | -- | -- | -- | -0.084 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 2 | 73.75 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 3 | 73.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 7 | 74.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 8 | 74.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 12 | 74.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 18 | 74.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 20 | 74.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 21 | 74.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 36 | 75.28 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 42 | 75.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 43 | 75.54 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 46 | 75.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 54 | 75.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 55 | 75.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 69 | 76.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 75 | 76.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 79 | 76.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 87 | 76.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 91 | 77.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 99 | 77.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 104 | 77.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 123 | 78.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 132 | 78.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 141 | 78.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 149 | 78.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 155 | 78.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 156 | 78.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 4 |
| 183 | 78.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 184 | 78.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 185 | 78.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 223 | 79.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 248 | 79.11 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 293 | 79.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 296 | 79.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 397 | 79.53 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 789 | 80.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 880 | 80.34 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |