Os01g0239700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Leucine-rich receptor-like protein kinase.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0239700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Leucine-rich receptor-like protein kinase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.39 | 0.509 | 12.4 | -0.205 | 1.24 | 1.68 | 0.781 | -0.202 | 0.0863 | 20.2 | 19.3 | 1903 | -- | -- |
| 117.41 | 0.505 | 12.4 | -0.18 | 1.24 | 1.74 | 0.759 | -- | 0.0939 | 20.2 | 19.4 | 1878 | -- | -- |
| 119.12 | 0.508 | 12.4 | -0.215 | 1.24 | 1.75 | -- | -0.105 | 0.0894 | 20.2 | 19.33 | 1871 | -- | -- |
| 119.13 | 0.508 | 12.4 | -0.202 | 1.24 | 1.76 | -- | -- | 0.0917 | 20.2 | 19.34 | 1871 | -- | -- |
| 187.15 | 0.637 | 12.4 | -0.0323 | -- | 1.5 | -- | 0.0762 | 0.0582 | -- | 20.6 | 622 | -- | -- |
| 165.09 | 0.602 | 12.3 | 0.518 | 1.28 | -- | 0.917 | -- | 0.407 | 20.3 | -- | -- | -- | -- |
| 167.67 | 0.606 | 12.3 | 0.492 | 1.28 | -- | -- | -- | 0.408 | 20.2 | -- | -- | -- | -- |
| 187.17 | 0.637 | 12.4 | -0.0471 | -- | 1.49 | -- | -- | 0.0552 | -- | 20.66 | 620 | -- | -- |
| 119.94 | 0.51 | 12.4 | -- | 1.26 | 1.7 | -- | -- | 0.128 | 20.2 | 19.3 | 1816 | -- | -- |
| 258.29 | 0.751 | 12.3 | 0.482 | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
| 174.05 | 0.617 | 12.3 | -- | 1.28 | -- | -- | -- | 0.353 | 20.2 | -- | -- | -- | -- |
| 187.23 | 0.637 | 12.4 | -- | -- | 1.48 | -- | -- | 0.0628 | -- | 20.66 | 619 | -- | -- |
| 264.43 | 0.759 | 12.3 | -- | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.95 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 115.61 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 4 | 115.97 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 22 |
| 8 | 116.96 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 22 |
| 12 | 117.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 14 | 117.49 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 16 | 117.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 18 | 117.65 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 22 | 118.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 26 | 118.48 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 28 | 118.64 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 33 | 118.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 37 | 118.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 49 | 119.32 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 56 | 119.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 64 | 119.46 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 69 | 119.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 92 | 119.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 109 | 119.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 120 | 119.96 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 15 |
| 138 | 120.18 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 215 | 120.89 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 218 | 120.94 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 220 | 120.97 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 282 | 121.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 292 | 121.35 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 322 | 121.57 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 341 | 121.68 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 22 |
| 345 | 121.69 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 16 |
| 354 | 121.71 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 376 | 121.80 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 382 | 121.82 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 22 |
| 435 | 122.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 437 | 122.04 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 446 | 122.07 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 462 | 122.13 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 464 | 122.14 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 483 | 122.19 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 485 | 122.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 507 | 122.26 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 523 | 122.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 531 | 122.30 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 638 | 122.54 | wind | 3 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 647 | 122.56 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 696 | 122.68 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 711 | 122.73 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 716 | 122.74 | wind | 5 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 739 | 122.80 | wind | 3 | 43200 | < th | dose dependent | sin | 9 | NA |
| 759 | 122.85 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 779 | 122.90 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 826 | 122.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 830 | 123.01 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 831 | 123.01 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 896 | 123.16 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 928 | 123.23 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 945 | 123.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 979 | 123.36 | wind | 3 | 43200 | < th | dose independent | sin | 4 | NA |