Os01g0239300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0239300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.89 | 0.225 | 12 | 0.533 | 0.625 | 0.614 | -0.0126 | 0.02 | 0.0504 | 20.5 | 15.53 | 10 | -- | -- |
| 22.8 | 0.224 | 12 | 0.536 | 0.627 | 0.595 | -0.00598 | -- | 0.0456 | 20.7 | 15.53 | 10 | -- | -- |
| 22.8 | 0.224 | 12 | 0.537 | 0.628 | 0.595 | -- | 0.0145 | 0.0456 | 20.7 | 15.53 | 10 | -- | -- |
| 22.8 | 0.224 | 12 | 0.536 | 0.627 | 0.595 | -- | -- | 0.0456 | 20.7 | 15.53 | 10 | -- | -- |
| 35.3 | 0.277 | 11.9 | 0.499 | -- | 0.894 | -- | -0.0242 | 0.0562 | -- | 10.55 | 10 | -- | -- |
| 29.16 | 0.253 | 12 | 0.523 | 1.16 | -- | 0.0798 | -- | 0.0352 | 22.3 | -- | -- | -- | -- |
| 29.19 | 0.253 | 12 | 0.52 | 1.16 | -- | -- | -- | 0.0351 | 22.3 | -- | -- | -- | -- |
| 35.11 | 0.276 | 11.9 | 0.5 | -- | 0.899 | -- | -- | 0.0428 | -- | 10.17 | 7 | -- | -- |
| 30.13 | 0.256 | 12 | -- | 0.594 | 0.62 | -- | -- | -0.00122 | 20.5 | 11.91 | 10 | -- | -- |
| 111.19 | 0.493 | 11.9 | 0.538 | -- | -- | -- | -- | 0.038 | -- | -- | -- | -- | -- |
| 36.32 | 0.282 | 12 | -- | 1.16 | -- | -- | -- | -0.0229 | 22.3 | -- | -- | -- | -- |
| 41.3 | 0.299 | 12 | -- | -- | 0.897 | -- | -- | -0.0072 | -- | 9.922 | 6 | -- | -- |
| 118.81 | 0.509 | 12 | -- | -- | -- | -- | -- | -0.0216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.14 | radiation | 10 | 10 | < th | dose dependent | sin | 1 | NA |
| 7 | 23.03 | radiation | 20 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 14 | 23.10 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 15 | 23.11 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 16 | 23.14 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 17 | 23.29 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 18 | 23.30 | radiation | 10 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 27 | 23.43 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 51 | 23.67 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 85 | 23.90 | radiation | 1 | 30 | < th | dose independent | sin | 1 | NA |
| 91 | 23.92 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 96 | 23.97 | radiation | 1 | 30 | > th | dose independent | sin | 1 | NA |
| 100 | 23.98 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 156 | 24.22 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 11 |
| 171 | 24.22 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 180 | 24.25 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 196 | 24.26 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 202 | 24.26 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 209 | 24.28 | radiation | 10 | 10 | < th | dose independent | rect. | 2 | 18 |
| 213 | 24.29 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 377 | 24.53 | radiation | 20 | 30 | < th | dose independent | rect. | 12 | 8 |
| 380 | 24.53 | radiation | 20 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 400 | 24.56 | radiation | 1 | 90 | < th | dose independent | rect. | 2 | 17 |
| 471 | 24.64 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 23 |
| 482 | 24.65 | radiation | 10 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 542 | 24.73 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 13 |
| 555 | 24.75 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 631 | 24.75 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 722 | 24.83 | wind | 1 | 270 | > th | dose independent | rect. | 24 | 19 |
| 759 | 24.85 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 782 | 24.89 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 19 |
| 870 | 24.97 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 10 |
| 893 | 24.99 | wind | 1 | 90 | > th | dose independent | rect. | 2 | 18 |
| 908 | 25.00 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 23 |
| 920 | 25.01 | humidity | 80 | 10 | > th | dose dependent | sin | 1 | NA |
| 946 | 25.03 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 16 |