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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0238700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Oligopeptide transporter OPT superfamily protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0353) R2 : 0.052
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.372 (0.0743) R2dN8 : 0.0672 R2N8 : 0.052
σ : 0.664
deviance : 202.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.56 0.619 3 0.269 0.0568 -0.747 -0.835 -0.497 0.565 14.8 26.22 745 -- --
173.86 0.614 2.99 0.38 0.0626 -0.754 -0.853 -- 0.592 14.9 26.3 744 -- --
175.89 0.618 3 0.258 0.0687 -0.748 -- -0.441 0.573 15.5 26.1 726 -- --
176.06 0.618 2.99 0.38 0.0807 -0.798 -- -- 0.606 17.1 26.24 736 -- --
176.13 0.618 3 0.242 -- -0.744 -- -0.477 0.563 -- 26.12 735 -- --
194.97 0.655 3.02 0.131 0.353 -- -0.0362 -- 0.384 9.21 -- -- -- --
194.97 0.654 3.02 0.13 0.354 -- -- -- 0.384 9.16 -- -- -- --
176.32 0.618 2.99 0.369 -- -0.773 -- -- 0.597 -- 26.27 744 -- --
179.59 0.624 3 -- 0.0569 -0.719 -- -- 0.553 16.9 26.2 726 -- --
202.22 0.664 3.03 0.129 -- -- -- -- 0.386 -- -- -- -- --
195.42 0.654 3.03 -- 0.354 -- -- -- 0.37 9.13 -- -- -- --
179.72 0.624 3 -- -- -0.707 -- -- 0.54 -- 26.3 744 -- --
202.66 0.664 3.04 -- -- -- -- -- 0.372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.72 atmosphere 1005 30 > th dose dependent rect. 5 6
2 172.39 atmosphere 1005 270 > th dose dependent rect. 3 5
5 172.68 temperature 30 270 < th dose dependent rect. 11 20
6 172.73 temperature 30 720 < th dose dependent rect. 10 14
20 173.51 temperature 30 720 < th dose dependent rect. 19 3
24 173.71 atmosphere 1005 30 > th dose dependent rect. 1 10
25 173.73 temperature 25 720 < th dose independent rect. 10 14
31 173.83 atmosphere 1005 30 > th dose dependent rect. 3 8
44 174.26 temperature 25 720 > th dose independent sin 18 NA
47 174.31 temperature 25 720 > th dose independent rect. 11 13
52 174.38 temperature 25 720 > th dose independent rect. 9 15
65 174.51 temperature 25 720 < th dose independent rect. 12 10
66 174.51 temperature 30 720 < th dose dependent sin 18 NA
69 174.55 temperature 25 720 < th dose independent sin 18 NA
76 174.61 temperature 30 720 < th dose dependent rect. 21 1
81 174.68 temperature 25 720 < th dose independent rect. 18 4
110 174.94 temperature 25 720 < th dose independent rect. 15 7
123 175.03 temperature 25 720 > th dose independent rect. 15 6
138 175.17 temperature 20 10 > th dose dependent rect. 20 10
145 175.27 temperature 25 720 > th dose independent rect. 18 1
148 175.30 temperature 10 720 > th dose dependent rect. 16 7
151 175.31 temperature 20 10 > th dose dependent rect. 22 8
159 175.35 temperature 20 30 > th dose dependent rect. 11 19
184 175.51 temperature 30 270 < th dose dependent rect. 17 14
194 175.59 temperature 15 30 > th dose dependent rect. 9 21
202 175.67 atmosphere 1005 30 > th dose independent rect. 6 5
209 175.71 temperature 25 720 > th dose independent rect. 13 9
213 175.72 temperature 15 720 > th dose dependent rect. 16 5
226 175.76 temperature 30 30 < th dose dependent rect. 15 18
240 175.84 temperature 20 30 > th dose independent rect. 9 21
303 176.20 temperature 20 720 > th dose dependent rect. 18 1
306 176.21 temperature 10 270 > th dose dependent rect. 7 22
311 176.25 temperature 25 720 > th dose independent rect. 16 3
315 176.26 temperature 10 720 > th dose dependent rect. 9 19
348 176.45 humidity 90 10 < th dose dependent rect. 3 4
355 176.48 temperature 20 720 > th dose dependent rect. 11 17
362 176.51 temperature 20 720 > th dose dependent rect. 9 19
364 176.52 temperature 20 720 > th dose dependent sin 17 NA
371 176.53 temperature 10 720 > th dose dependent rect. 11 17
398 176.63 temperature 10 10 > th dose dependent rect. 7 23
414 176.69 temperature 10 720 > th dose dependent sin 17 NA
458 176.85 temperature 10 720 > th dose dependent rect. 16 10
594 177.33 wind 7 720 > th dose independent rect. 19 3
664 177.55 temperature 25 90 < th dose dependent rect. 2 23
701 177.65 temperature 10 720 > th dose dependent rect. 15 13
828 177.93 temperature 25 90 < th dose dependent rect. 2 21
834 177.97 temperature 25 90 < th dose dependent rect. 23 23
860 178.03 temperature 20 30 > th dose independent rect. 24 15
877 178.06 temperature 25 720 < th dose independent rect. 2 23
904 178.13 humidity 90 270 < th dose independent rect. 3 4
907 178.13 temperature 20 270 > th dose dependent rect. 18 11
957 178.22 temperature 20 90 < th dose independent rect. 3 18
975 178.27 wind 7 720 > th dose independent rect. 20 1
977 178.27 wind 7 720 > th dose dependent rect. 19 3
991 178.30 temperature 10 30 > th dose dependent rect. 11 23
999 178.34 temperature 25 720 > th dose independent no NA NA