FiT-DB / Search/ Help/ Sample detail

Os01g0237500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NmrA-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.24 (0.0718) R2 : 0.504
β1 : 6 (0.296) R2dD : 0.599 R2D : 0.123
β2 : 0.572 (0.179) R2dC : 0.0111 R2C : -0.0374
β3 : -4.22 (0.332) R2dE : 0.231 R2E : -0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.74 (0.157) R2dN8 : 0.198 R2N8 : -0.0128
σ : 1.33
deviance : 816.68
__
_____
C
peak time of C : 20.6
E
wheather : temperature
threshold : 16.2
memory length : 4321
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.3
open length of G : 0.741

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
811.39 1.34 6.26 5.96 0.575 -4.3 1.31 -0.633 1.75 20.3 15.23 4322 13.3 0.884
811.72 1.33 6.25 6.04 0.573 -4.24 1.34 -- 1.74 20.3 15.56 4321 13.3 0.739
816.58 1.33 6.25 5.93 0.564 -4.27 -- -0.514 1.75 20.6 15.57 4321 13.3 0.866
816.68 1.33 6.24 6 0.572 -4.22 -- -- 1.74 20.6 16.2 4321 13.3 0.741
834.84 1.35 6.24 5.91 -- -4.22 -- -0.525 1.74 -- 16.04 4323 13.3 0.883
1101.05 1.56 6.35 4.28 0.516 -- 1.57 -- 1.27 19.5 -- -- -- --
1107.8 1.56 6.35 4.24 0.516 -- -- -- 1.27 19.7 -- -- -- --
834.95 1.35 6.23 6.01 -- -4.2 -- -- 1.77 -- 16.22 4321 13.3 0.75
1540.61 1.83 6.33 -- 0.826 -2.09 -- -- 1.05 21.2 27.71 3169 12.7 2.09
1122.17 1.57 6.33 4.23 -- -- -- -- 1.27 -- -- -- -- --
1581.96 1.86 6.45 -- 0.489 -- -- -- 0.802 20.3 -- -- -- --
1502.66 1.81 6.33 -- -- -1.74 -- -- 1.13 -- 23.92 3371 18 0.583
1595.24 1.86 6.44 -- -- -- -- -- 0.797 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 804.24 humidity 90 43200 < th dose independent rect. 19 2
2 804.86 humidity 90 43200 < th dose independent rect. 15 6
4 805.06 humidity 90 43200 < th dose independent rect. 8 14
41 809.04 humidity 90 43200 < th dose independent sin 21 NA
61 810.34 radiation 10 14400 < th dose independent rect. 17 14
62 810.41 radiation 1 14400 > th dose dependent rect. 18 12
63 810.52 humidity 90 43200 < th dose independent rect. 8 4
75 811.45 humidity 80 43200 > th dose dependent rect. 16 3
79 811.67 humidity 90 43200 > th dose independent rect. 8 14
82 811.92 humidity 90 43200 > th dose independent rect. 8 4
83 811.97 humidity 90 43200 > th dose independent rect. 8 1
98 812.46 temperature 15 4320 > th dose dependent rect. 13 1
105 812.69 humidity 80 43200 > th dose dependent rect. 9 2
114 813.06 humidity 80 43200 > th dose dependent rect. 8 12
150 814.13 wind 5 43200 < th dose independent rect. 5 1
154 814.27 temperature 25 43200 < th dose dependent rect. 17 1
157 814.32 radiation 1 14400 > th dose dependent rect. 4 2
181 814.71 humidity 90 43200 > th dose independent rect. 17 4
183 814.77 radiation 1 14400 < th dose independent rect. 17 18
186 814.82 humidity 80 43200 > th dose independent rect. 16 1
194 815.04 temperature 10 4320 > th dose dependent rect. 11 4
216 815.36 humidity 90 43200 > th dose independent rect. 19 2
231 815.65 humidity 90 43200 > th dose dependent rect. 19 2
235 815.68 wind 5 43200 > th dose independent rect. 5 1
242 815.82 temperature 10 43200 > th dose dependent rect. 17 1
253 816.09 radiation 1 14400 > th dose independent rect. 17 18
262 816.21 humidity 90 43200 > th dose independent sin 22 NA
319 816.78 radiation 1 14400 < th dose independent rect. 7 11
343 816.95 radiation 20 14400 > th dose dependent rect. 16 16
384 817.35 radiation 10 14400 < th dose independent rect. 17 1
413 817.63 humidity 60 43200 > th dose independent rect. 15 3
437 817.87 humidity 80 43200 > th dose dependent sin 22 NA
442 817.90 radiation 1 14400 > th dose independent rect. 7 11
456 817.95 radiation 1 14400 < th dose independent rect. 7 15
460 817.96 radiation 1 14400 < th dose independent rect. 7 17
462 817.96 radiation 1 14400 < th dose independent rect. 7 22
657 819.08 humidity 60 43200 < th dose independent rect. 14 4
725 819.34 temperature 25 43200 < th dose dependent sin 19 NA
728 819.35 radiation 1 14400 > th dose independent rect. 5 9
748 819.42 radiation 1 14400 < th dose independent rect. 23 20
749 819.42 radiation 1 14400 < th dose independent rect. 21 22
783 819.46 radiation 1 14400 < th dose independent no NA NA
806 819.52 temperature 10 43200 > th dose dependent sin 17 NA
809 819.53 wind 5 43200 > th dose independent rect. 10 2
811 819.55 humidity 60 43200 < th dose independent rect. 16 1
814 819.56 radiation 1 14400 < th dose independent sin 1 NA
817 819.57 radiation 1 14400 < th dose independent rect. 5 9
861 819.73 wind 5 43200 < th dose independent rect. 10 2
881 819.78 radiation 1 14400 < th dose independent rect. 5 7
903 819.86 temperature 25 43200 < th dose dependent rect. 4 18
987 820.02 radiation 1 14400 < th dose independent sin 11 NA