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Os01g0237100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphoglycerate mutase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0241) R2 : 0.89
β1 : -1.5 (0.088) R2dD : 0.0809 R2D : 0.0434
β2 : 2.23 (0.0617) R2dC : 0.324 R2C : 0.111
β3 : 3.54 (0.0671) R2dE : 0.696 R2E : 0.468
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.362 (0.0513) R2dN8 : 0.0212 R2N8 : 0.00744
σ : 0.449
deviance : 93.06
__
_____
C
peak time of C : 20.6
E
wheather : temperature
threshold : 3.429
memory length : 316
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.97
open length of G : 8.38

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.09 0.438 11.9 -1.62 2.4 3.1 0.55 -2 -0.469 19.7 8.762 275 7.02 8.17
89.37 0.44 11.9 -1.56 2.23 3.64 1.27 -- -0.346 20.7 4.135 324 7 8.19
85.59 0.431 11.9 -1.62 2.22 3.22 -- -2.09 -0.453 20 7.668 312 6.88 8.42
93.06 0.449 11.9 -1.5 2.23 3.54 -- -- -0.362 20.6 3.429 316 6.97 8.38
155.77 0.581 11.9 -1.59 -- 3.7 -- -1.4 -0.553 -- -12.05 730 6.04 8.57
165.58 0.603 11.9 -1.37 3.39 -- -0.785 -- -0.409 16.7 -- -- -- --
167.19 0.606 11.9 -1.37 3.38 -- -- -- -0.413 16.7 -- -- -- --
159.02 0.587 11.9 -1.53 -- 3.59 -- -- -0.501 -- -21.22 729 6.23 8.32
153 0.576 11.9 -- 2.59 4 -- -- -0.264 21.6 -12.92 356 6.3 8.84
774.93 1.3 11.9 -1.5 -- -- -- -- -0.501 -- -- -- -- --
216.76 0.689 11.9 -- 3.41 -- -- -- -0.26 16.7 -- -- -- --
219.09 0.689 11.8 -- -- 3.69 -- -- -0.295 -- -65.7 686 6.03 9.43
834.28 1.35 11.8 -- -- -- -- -- -0.335 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.60 temperature 10.0 270 > th dose dependent rect. 7 8
13 101.54 precipitation 0.1 270 < th dose independent rect. 21 6
14 101.54 precipitation 0.1 270 < th dose dependent rect. 21 6
15 101.69 wind 7.0 270 < th dose independent rect. 21 6
17 101.83 atmosphere 1015.0 270 < th dose independent rect. 3 18
19 102.24 temperature 10.0 270 > th dose independent rect. 21 6
20 102.24 temperature 30.0 270 < th dose independent rect. 21 6
21 102.24 humidity 50.0 270 > th dose independent rect. 21 6
24 102.24 atmosphere 995.0 270 > th dose independent rect. 21 6
25 102.24 radiation 1.0 270 < th dose independent rect. 21 6
30 102.24 temperature 10.0 270 > th dose independent rect. 3 18
31 102.24 radiation 1.0 270 < th dose dependent rect. 21 6
38 103.70 temperature 15.0 270 > th dose independent rect. 7 9
40 104.28 wind 9.0 270 < th dose independent rect. 3 18
43 105.15 atmosphere 995.0 270 > th dose independent rect. 3 18
44 105.16 radiation 40.0 270 < th dose independent rect. 3 18
45 105.17 radiation 20.0 270 < th dose independent rect. 16 15
47 105.21 precipitation 0.1 270 < th dose independent rect. 9 17
48 105.21 precipitation 0.1 270 < th dose dependent rect. 9 17
54 105.61 radiation 40.0 270 < th dose dependent rect. 16 15
57 105.67 wind 5.0 90 < th dose independent rect. 23 5
58 105.85 radiation 1.0 270 > th dose independent rect. 7 9
82 106.30 wind 9.0 270 < th dose independent rect. 7 9
85 106.55 precipitation 0.1 90 < th dose independent rect. 23 5
86 106.55 precipitation 0.1 90 < th dose dependent rect. 23 5
89 106.82 temperature 10.0 90 > th dose independent rect. 23 5
90 106.82 temperature 30.0 90 < th dose independent rect. 23 5
91 106.82 humidity 50.0 90 > th dose independent rect. 23 5
94 106.82 atmosphere 995.0 90 > th dose independent rect. 23 5
95 106.82 radiation 1.0 90 < th dose independent rect. 23 5
101 106.82 radiation 1.0 90 < th dose dependent rect. 23 5
108 107.06 temperature 10.0 270 > th dose dependent rect. 8 18
114 107.34 wind 9.0 270 < th dose independent rect. 9 17
115 107.36 precipitation 0.1 270 < th dose independent rect. 3 18
116 107.36 precipitation 0.1 270 < th dose dependent rect. 3 18
122 107.85 temperature 30.0 270 < th dose independent rect. 2 7
123 107.86 radiation 40.0 270 < th dose dependent rect. 3 17
143 108.01 atmosphere 995.0 270 > th dose independent rect. 16 15
144 108.14 precipitation 0.1 270 < th dose independent rect. 7 9
145 108.14 precipitation 0.1 270 < th dose dependent rect. 7 9
146 108.19 wind 7.0 10 < th dose independent rect. 23 6
147 108.25 precipitation 0.1 270 < th dose independent rect. 2 7
149 108.25 precipitation 0.1 270 < th dose dependent rect. 2 7
151 108.28 radiation 1.0 10 < th dose dependent rect. 23 6
154 108.41 wind 9.0 270 < th dose independent rect. 16 15
156 108.52 atmosphere 1015.0 270 < th dose independent rect. 7 9
157 108.52 temperature 10.0 270 > th dose independent rect. 16 15
159 108.55 wind 1.0 270 > th dose independent rect. 7 9
161 108.59 wind 9.0 270 < th dose independent rect. 2 7
162 108.59 temperature 10.0 270 > th dose independent rect. 2 7
164 108.59 humidity 50.0 270 > th dose independent rect. 2 7
165 108.59 atmosphere 995.0 270 > th dose independent rect. 2 7
166 108.59 atmosphere 1015.0 270 < th dose independent rect. 2 7
167 108.59 temperature 10.0 270 > th dose independent rect. 9 17
178 108.80 temperature 10.0 10 > th dose independent rect. 23 6
179 108.80 temperature 30.0 10 < th dose independent rect. 23 6
180 108.80 humidity 50.0 10 > th dose independent rect. 23 6
183 108.80 atmosphere 995.0 10 > th dose independent rect. 23 6
184 108.80 radiation 1.0 10 < th dose independent rect. 23 6
189 108.80 temperature 10.0 10 > th dose independent rect. 5 18
191 108.80 atmosphere 1015.0 10 < th dose independent rect. 5 18
193 108.84 humidity 50.0 270 > th dose independent rect. 16 15
199 109.17 precipitation 0.1 270 < th dose independent rect. 8 19
200 109.17 precipitation 0.1 270 < th dose dependent rect. 8 19
203 109.25 wind 7.0 270 < th dose independent rect. 22 15
206 109.37 radiation 1.0 10 < th dose dependent rect. 23 13
208 109.38 radiation 40.0 270 < th dose dependent rect. 3 6
214 109.43 precipitation 0.1 10 < th dose independent rect. 5 18
215 109.43 precipitation 0.1 10 < th dose dependent rect. 5 18
224 109.60 temperature 30.0 270 < th dose dependent rect. 3 16
226 109.62 radiation 1.0 10 < th dose dependent rect. 23 9
231 109.66 wind 1.0 270 > th dose independent rect. 21 6
241 109.75 atmosphere 995.0 10 > th dose dependent rect. 5 18
246 109.85 wind 9.0 90 < th dose dependent rect. 23 5
277 110.01 radiation 40.0 270 < th dose independent rect. 13 9
301 110.13 wind 7.0 270 < th dose independent rect. 23 2
312 110.26 precipitation 0.1 270 < th dose independent rect. 23 2
314 110.26 precipitation 0.1 270 < th dose dependent rect. 23 2
342 110.46 humidity 50.0 270 > th dose dependent rect. 2 7
346 110.52 temperature 10.0 270 > th dose independent rect. 23 2
347 110.52 temperature 30.0 270 < th dose independent rect. 23 2
348 110.52 humidity 50.0 270 > th dose independent rect. 23 2
351 110.52 atmosphere 995.0 270 > th dose independent rect. 23 2
352 110.52 radiation 1.0 270 < th dose independent rect. 23 2
358 110.52 temperature 10.0 270 > th dose independent rect. 1 22
359 110.52 radiation 1.0 270 < th dose dependent rect. 23 2
366 110.58 temperature 30.0 10 < th dose independent rect. 5 18
375 110.68 radiation 40.0 270 < th dose independent rect. 2 7
376 110.68 atmosphere 995.0 10 > th dose independent rect. 5 18
380 110.75 wind 7.0 270 < th dose independent rect. 8 19
389 110.87 wind 9.0 270 < th dose dependent rect. 21 6
399 111.08 temperature 10.0 1440 > th dose independent rect. 24 5
402 111.08 temperature 30.0 1440 < th dose independent rect. 24 5
406 111.08 humidity 50.0 1440 > th dose independent rect. 24 5
415 111.08 atmosphere 995.0 1440 > th dose independent rect. 24 5
416 111.08 radiation 20.0 1440 < th dose independent rect. 24 5
428 111.08 temperature 10.0 1440 > th dose independent rect. 5 19
464 111.45 wind 9.0 10 < th dose independent rect. 5 18
465 111.45 radiation 40.0 1440 < th dose dependent rect. 24 5
475 111.77 radiation 20.0 270 < th dose independent rect. 3 5
476 111.77 precipitation 0.1 270 < th dose independent rect. 3 5
478 111.77 precipitation 0.1 270 < th dose dependent rect. 3 5
484 111.84 atmosphere 995.0 270 > th dose independent rect. 7 9
497 112.05 temperature 15.0 10 > th dose dependent rect. 9 8
505 112.14 wind 9.0 270 < th dose dependent rect. 3 5
516 112.24 radiation 40.0 90 < th dose independent rect. 4 7
518 112.28 wind 9.0 270 < th dose independent rect. 3 5
519 112.28 temperature 10.0 270 > th dose independent rect. 3 5
522 112.28 humidity 50.0 270 > th dose independent rect. 3 5
524 112.28 atmosphere 995.0 270 > th dose independent rect. 3 5
525 112.28 atmosphere 1015.0 270 < th dose independent rect. 3 5
526 112.28 temperature 10.0 270 > th dose independent rect. 8 19
528 112.34 radiation 1.0 10 < th dose independent rect. 23 13
541 112.46 radiation 40.0 270 < th dose independent rect. 3 5
552 112.55 radiation 10.0 270 < th dose independent rect. 3 17
569 112.70 wind 1.0 90 > th dose independent rect. 23 5
603 112.79 wind 1.0 270 > th dose independent rect. 9 17
607 112.84 humidity 50.0 90 > th dose dependent rect. 23 5
610 112.91 radiation 40.0 90 < th dose dependent rect. 13 10
656 113.13 atmosphere 1015.0 90 < th dose independent rect. 23 5
663 113.21 radiation 40.0 10 < th dose dependent rect. 5 18
667 113.24 temperature 10.0 90 > th dose dependent rect. 23 5
686 113.39 temperature 25.0 270 < th dose independent rect. 3 16
715 113.63 temperature 10.0 270 > th dose dependent rect. 22 15
731 113.65 humidity 50.0 270 > th dose independent rect. 22 15
738 113.68 wind 9.0 10 < th dose dependent rect. 23 6
767 113.99 wind 9.0 270 < th dose independent rect. 1 22
779 114.07 wind 9.0 270 < th dose dependent rect. 23 2
822 114.35 precipitation 0.1 270 < th dose independent rect. 16 15
823 114.35 precipitation 0.1 270 < th dose dependent rect. 16 15
851 114.41 humidity 50.0 10 > th dose dependent rect. 23 6
871 114.47 atmosphere 1015.0 270 < th dose independent rect. 21 6
873 114.48 humidity 50.0 270 > th dose dependent rect. 21 6
879 114.56 humidity 90.0 270 < th dose independent rect. 8 7
914 114.81 temperature 15.0 270 > th dose independent rect. 13 9
915 114.81 radiation 40.0 90 < th dose dependent rect. 15 8
942 114.91 temperature 30.0 90 < th dose independent rect. 4 18
945 114.93 temperature 10.0 270 > th dose independent rect. 22 15
946 114.93 atmosphere 995.0 270 > th dose independent rect. 22 15
963 114.98 temperature 30.0 10 < th dose dependent rect. 5 18
971 115.05 precipitation 0.1 270 < th dose independent rect. 22 15
972 115.05 precipitation 0.1 270 < th dose dependent rect. 22 15