Os01g0236800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2).
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Os01g0236800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.53 | 0.299 | 12.3 | 0.162 | 1.35 | -0.327 | 0.634 | -0.241 | -0.168 | 6.2 | 24.5 | 134 | -- | -- |
| 40.68 | 0.297 | 12.3 | 0.0888 | 1.33 | -0.336 | 0.543 | -- | -0.19 | 6.21 | 24.3 | 123 | -- | -- |
| 41.34 | 0.299 | 12.3 | 0.142 | 1.34 | -0.325 | -- | -0.132 | -0.176 | 6.22 | 24.38 | 131 | -- | -- |
| 41.39 | 0.3 | 12.3 | 0.0968 | 1.33 | -0.327 | -- | -- | -0.188 | 6.23 | 24.31 | 123 | -- | -- |
| 112.9 | 0.495 | 12.3 | 0.256 | -- | -0.485 | -- | -0.539 | -0.112 | -- | 24.56 | 1331 | -- | -- |
| 47.32 | 0.322 | 12.3 | 0.199 | 1.2 | -- | 0.394 | -- | -0.0089 | 6.57 | -- | -- | -- | -- |
| 47.71 | 0.323 | 12.3 | 0.205 | 1.2 | -- | -- | -- | -0.0101 | 6.58 | -- | -- | -- | -- |
| 113.35 | 0.496 | 12.3 | 0.0556 | -- | -0.537 | -- | -- | -0.173 | -- | 24.8 | 1336 | -- | -- |
| 41.63 | 0.3 | 12.3 | -- | 1.34 | -0.341 | -- | -- | -0.205 | 6.21 | 24.33 | 123 | -- | -- |
| 122.45 | 0.517 | 12.3 | 0.234 | -- | -- | -- | -- | 0.0144 | -- | -- | -- | -- | -- |
| 48.81 | 0.327 | 12.3 | -- | 1.2 | -- | -- | -- | -0.0329 | 6.57 | -- | -- | -- | -- |
| 113.42 | 0.496 | 12.4 | -- | -- | -0.552 | -- | -- | -0.183 | -- | 24.86 | 1336 | -- | -- |
| 123.89 | 0.52 | 12.3 | -- | -- | -- | -- | -- | -0.0115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 7 | 37.01 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 10 | 37.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 32 | 37.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 33 | 37.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 62 | 38.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 71 | 38.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 90 | 38.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 104 | 38.67 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 19 |
| 108 | 38.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 115 | 38.75 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 19 |
| 119 | 38.77 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 18 |
| 126 | 38.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 136 | 38.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 15 |
| 140 | 38.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 156 | 38.94 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 10 |
| 167 | 38.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 181 | 39.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 200 | 39.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 210 | 39.20 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 13 |
| 280 | 39.42 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 297 | 39.47 | temperature | 25 | 270 | < th | dose independent | sin | 10 | NA |
| 315 | 39.51 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 327 | 39.54 | temperature | 25 | 270 | > th | dose independent | sin | 10 | NA |
| 440 | 39.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 458 | 39.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 463 | 39.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 500 | 39.96 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 21 |
| 531 | 40.02 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 2 |
| 577 | 40.10 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 590 | 40.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 608 | 40.14 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 655 | 40.20 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 689 | 40.25 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 731 | 40.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 766 | 40.35 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 779 | 40.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 796 | 40.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 840 | 40.44 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 846 | 40.45 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 20 |
| 889 | 40.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 22 |
| 904 | 40.52 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 23 |
| 946 | 40.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 948 | 40.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 951 | 40.57 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 959 | 40.58 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 960 | 40.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 1 |