Os01g0236300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 18.
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Os01g0236300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 18.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.93 | 0.412 | 10.2 | 0.587 | 1.45 | -1.12 | 0.907 | -1.85 | 0.479 | 2.19 | 5.407 | 4348 | -- | -- |
| 78.75 | 0.413 | 10.2 | 0.607 | 1.46 | -0.876 | 0.92 | -- | 0.454 | 2.11 | 4.943 | 4404 | -- | -- |
| 79.99 | 0.417 | 10.2 | 0.581 | 1.45 | -1.13 | -- | -1.91 | 0.479 | 2.17 | 5.5 | 4339 | -- | -- |
| 80.34 | 0.417 | 10.2 | 0.441 | 1.54 | -0.957 | -- | -- | 0.6 | 1.96 | 5 | 6565 | -- | -- |
| 194.85 | 0.65 | 10.1 | 0.393 | -- | -1.6 | -- | -2.34 | 0.604 | -- | 6.145 | 4634 | -- | -- |
| 91.46 | 0.448 | 10.2 | 0.916 | 1.49 | -- | 0.987 | -- | 0.487 | 2.05 | -- | -- | -- | -- |
| 95.15 | 0.457 | 10.2 | 0.887 | 1.5 | -- | -- | -- | 0.481 | 2.03 | -- | -- | -- | -- |
| 200.3 | 0.659 | 10.2 | 0.547 | -- | -1.22 | -- | -- | 0.546 | -- | 5.729 | 4636 | -- | -- |
| 84.45 | 0.428 | 10.2 | -- | 1.51 | -1.06 | -- | -- | 0.606 | 1.89 | 4.801 | 6430 | -- | -- |
| 229.48 | 0.708 | 10.2 | 0.949 | -- | -- | -- | -- | 0.517 | -- | -- | -- | -- | -- |
| 115.89 | 0.504 | 10.2 | -- | 1.51 | -- | -- | -- | 0.383 | 2.05 | -- | -- | -- | -- |
| 205.87 | 0.668 | 10.2 | -- | -- | -1.42 | -- | -- | 0.464 | -- | 5.7 | 4636 | -- | -- |
| 253.25 | 0.743 | 10.2 | -- | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.11 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 2 | 73.12 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 3 | 73.21 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 4 | 73.22 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 6 | 73.30 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 10 | 73.41 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 29 | 73.86 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 33 | 73.94 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 39 | 74.01 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 58 | 74.26 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 19 |
| 62 | 74.38 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 78 | 74.66 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 81 | 74.70 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 84 | 74.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 88 | 74.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 92 | 74.80 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 12 |
| 116 | 75.06 | wind | 7 | 4320 | > th | dose independent | sin | 15 | NA |
| 122 | 75.12 | wind | 7 | 4320 | < th | dose independent | sin | 15 | NA |
| 135 | 75.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 138 | 75.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 147 | 75.32 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 209 | 75.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 232 | 75.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 235 | 75.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 244 | 75.79 | wind | 5 | 4320 | > th | dose dependent | sin | 15 | NA |
| 272 | 75.87 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 310 | 76.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 330 | 76.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 356 | 76.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 365 | 76.31 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 427 | 76.55 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 434 | 76.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 435 | 76.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 448 | 76.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 463 | 76.72 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 469 | 76.74 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 480 | 76.80 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 16 |
| 498 | 76.86 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 22 |
| 504 | 76.88 | wind | 7 | 4320 | < th | dose independent | rect. | 3 | 18 |
| 517 | 76.91 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 20 |
| 518 | 76.91 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 521 | 76.92 | wind | 7 | 4320 | < th | dose independent | rect. | 24 | 21 |
| 540 | 76.97 | wind | 7 | 4320 | > th | dose independent | rect. | 3 | 18 |
| 541 | 76.97 | wind | 5 | 4320 | > th | dose dependent | rect. | 24 | 21 |
| 548 | 76.98 | wind | 7 | 4320 | > th | dose independent | rect. | 24 | 21 |
| 595 | 77.11 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 602 | 77.12 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 606 | 77.12 | wind | 5 | 4320 | > th | dose dependent | rect. | 2 | 19 |
| 610 | 77.13 | wind | 7 | 4320 | < th | dose independent | rect. | 3 | 22 |
| 611 | 77.13 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 22 |
| 614 | 77.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 9 |
| 621 | 77.14 | wind | 5 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 652 | 77.19 | wind | 7 | 4320 | > th | dose independent | rect. | 3 | 22 |
| 670 | 77.21 | wind | 5 | 4320 | > th | dose dependent | no | NA | NA |
| 671 | 77.22 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 675 | 77.22 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 690 | 77.26 | wind | 7 | 4320 | < th | dose independent | no | NA | NA |
| 702 | 77.28 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 727 | 77.32 | wind | 7 | 4320 | > th | dose independent | no | NA | NA |
| 752 | 77.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 12 | 16 |
| 765 | 77.36 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 774 | 77.38 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 796 | 77.41 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 804 | 77.42 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 852 | 77.50 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 894 | 77.58 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 2 |
| 959 | 77.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 16 |