Os01g0234900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2.
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Os01g0234900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.17 | 0.29 | 12.1 | 0.0618 | 1.79 | -0.875 | 0.556 | 0.131 | 0.25 | 2.74 | 25.16 | 383 | -- | -- |
| 38.15 | 0.288 | 12.1 | 0.0832 | 1.78 | -0.894 | 0.57 | -- | 0.261 | 2.73 | 24.78 | 399 | -- | -- |
| 39.18 | 0.292 | 12.1 | 0.0187 | 1.79 | -0.859 | -- | 0.317 | 0.246 | 2.72 | 24.98 | 376 | -- | -- |
| 39.27 | 0.292 | 12.1 | 0.07 | 1.78 | -0.893 | -- | -- | 0.261 | 2.72 | 24.68 | 392 | -- | -- |
| 186.92 | 0.64 | 12.1 | 0.317 | -- | 1.24 | -- | 1.95 | 0.632 | -- | 28.5 | 1043 | -- | -- |
| 49.62 | 0.33 | 12.1 | 0.312 | 1.71 | -- | 0.562 | -- | 0.436 | 2.56 | -- | -- | -- | -- |
| 50.74 | 0.334 | 12.1 | 0.298 | 1.71 | -- | -- | -- | 0.432 | 2.55 | -- | -- | -- | -- |
| 188.7 | 0.64 | 12.2 | -0.0703 | -- | -1.48 | -- | -- | 0.146 | -- | 28 | 1036 | -- | -- |
| 39.38 | 0.292 | 12.1 | -- | 1.78 | -0.926 | -- | -- | 0.247 | 2.72 | 24.67 | 388 | -- | -- |
| 223.05 | 0.698 | 12.1 | 0.371 | -- | -- | -- | -- | 0.475 | -- | -- | -- | -- | -- |
| 53.08 | 0.341 | 12.1 | -- | 1.72 | -- | -- | -- | 0.399 | 2.56 | -- | -- | -- | -- |
| 188.81 | 0.64 | 12.1 | -- | -- | -1.45 | -- | -- | 0.16 | -- | 28 | 1036 | -- | -- |
| 226.68 | 0.703 | 12.1 | -- | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 14 |
| 3 | 35.67 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 30 | 37.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 24 | 5 |
| 31 | 37.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 58 | 37.44 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 83 | 37.70 | temperature | 25.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 86 | 37.72 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 9 |
| 118 | 37.92 | temperature | 25.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 234 | 38.57 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 284 | 38.79 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 319 | 38.93 | temperature | 15.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 331 | 38.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 360 | 39.08 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 364 | 39.09 | temperature | 15.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 412 | 39.27 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 426 | 39.31 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 427 | 39.31 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 458 | 39.38 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 469 | 39.41 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 472 | 39.42 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 473 | 39.42 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 474 | 39.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 515 | 39.53 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 517 | 39.54 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 518 | 39.54 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 520 | 39.54 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 521 | 39.54 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 525 | 39.54 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 531 | 39.55 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 532 | 39.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 538 | 39.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 571 | 39.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 598 | 39.58 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 603 | 39.58 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 604 | 39.58 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 605 | 39.58 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 626 | 39.59 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 2 | NA |
| 631 | 39.59 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 633 | 39.59 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 634 | 39.59 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 669 | 39.60 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 670 | 39.60 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 719 | 39.61 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 750 | 39.61 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 823 | 39.62 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 22 | NA |
| 825 | 39.62 | atmosphere | 1010.0 | 43200 | > th | dose dependent | no | NA | NA |
| 842 | 39.62 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 872 | 39.62 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 881 | 39.62 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 9 | 22 |