Os01g0234800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vesicle transport protein-like.
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Os01g0234800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vesicle transport protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.83 | 0.209 | 9.56 | 0.0827 | 0.539 | -0.175 | 0.0165 | -0.554 | 0.269 | 4.15 | 1012 | 13939 | -- | -- |
| 20.44 | 0.211 | 9.59 | -0.164 | 0.515 | -0.239 | 0.0474 | -- | 0.222 | 3.96 | 1012 | 24567 | -- | -- |
| 19.83 | 0.207 | 9.56 | 0.0812 | 0.538 | -0.175 | -- | -0.549 | 0.269 | 4.14 | 1012 | 13962 | -- | -- |
| 20.28 | 0.21 | 9.6 | -0.211 | 0.537 | -0.245 | -- | -- | 0.183 | 4.17 | 1012 | 28514 | -- | -- |
| 35.52 | 0.278 | 9.57 | 0.125 | -- | -0.181 | -- | -0.582 | 0.285 | -- | 1012 | 19011 | -- | -- |
| 22.02 | 0.22 | 9.58 | -0.0311 | 0.544 | -- | 0.0214 | -- | 0.269 | 4.14 | -- | -- | -- | -- |
| 22.02 | 0.22 | 9.58 | -0.0313 | 0.544 | -- | -- | -- | 0.269 | 4.14 | -- | -- | -- | -- |
| 35.98 | 0.279 | 9.59 | -0.193 | -- | -0.268 | -- | -- | 0.198 | -- | 1012 | 24382 | -- | -- |
| 20.96 | 0.213 | 9.59 | -- | 0.538 | -0.184 | -- | -- | 0.231 | 4.15 | 1012 | 24654 | -- | -- |
| 38.09 | 0.288 | 9.58 | -0.00933 | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
| 22.05 | 0.22 | 9.58 | -- | 0.544 | -- | -- | -- | 0.272 | 4.14 | -- | -- | -- | -- |
| 36.53 | 0.281 | 9.59 | -- | -- | -0.214 | -- | -- | 0.233 | -- | 1013 | 24427 | -- | -- |
| 38.09 | 0.288 | 9.58 | -- | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.26 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 2 | 19.30 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 6 | 19.36 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 44 | 19.66 | wind | 7.0 | 1440 | > th | dose independent | rect. | 22 | 7 |
| 50 | 19.67 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 57 | 19.69 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 64 | 19.70 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 6 |
| 73 | 19.73 | wind | 7.0 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 121 | 19.80 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 122 | 19.80 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 165 | 19.84 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 183 | 19.85 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 203 | 19.85 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 207 | 19.85 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 13 | 22 |
| 211 | 19.86 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 214 | 19.86 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 248 | 19.86 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 252 | 19.87 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 258 | 19.87 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 289 | 19.87 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 307 | 19.87 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 344 | 19.87 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 15 | NA |
| 347 | 19.87 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 366 | 19.88 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 370 | 19.88 | atmosphere | 1015.0 | 43200 | < th | dose independent | no | NA | NA |
| 427 | 19.88 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 520 | 19.88 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 541 | 19.89 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 546 | 19.89 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 559 | 19.89 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 603 | 19.89 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 701 | 19.89 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 703 | 19.89 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 709 | 19.89 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 714 | 19.89 | humidity | 50.0 | 14400 | < th | dose dependent | no | NA | NA |
| 715 | 19.89 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 718 | 19.89 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 855 | 19.90 | humidity | 50.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 860 | 19.90 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 864 | 19.90 | atmosphere | 1015.0 | 43200 | > th | dose independent | no | NA | NA |
| 870 | 19.90 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 889 | 19.90 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 909 | 19.90 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 968 | 19.90 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 4 | 19 |