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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0233800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Viroid symptom modulation protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0176) R2 : 0.00207
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.036 (0.037) R2dN8 : 0.00267 R2N8 : 0.00207
σ : 0.331
deviance : 50.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.13 0.326 3.04 0.0495 0.237 -0.203 -0.523 0.866 -0.0253 11.4 0.5 30 -- --
48.81 0.328 3.05 -0.00473 0.193 -0.162 0.453 -- -0.0348 11.2 0.5 30 -- --
48.41 0.324 3.03 0.0577 0.254 -0.23 -- 0.559 -0.0161 11.5 0.3598 28 -- --
49.42 0.327 3.05 0.0233 0.201 -0.179 -- -- -0.0317 11.4 0.1359 23 -- --
48.95 0.326 3.04 0.0151 -- -0.0364 -- 0.433 -0.0264 -- 0.61 52 -- --
49.48 0.33 3.05 -0.0147 0.0012 -- -0.443 -- -0.0375 23.7 -- -- -- --
50.3 0.332 3.05 0.00246 0.0226 -- -- -- -0.0362 5.21 -- -- -- --
50.13 0.33 3.05 -0.000966 -- -0.0359 -- -- -0.031 -- 0.1388 39 -- --
49.43 0.327 3.05 -- 0.203 -0.179 -- -- -0.0316 11.4 0.13 23 -- --
50.33 0.331 3.05 0.00326 -- -- -- -- -0.0356 -- -- -- -- --
50.3 0.332 3.05 -- 0.0227 -- -- -- -0.0365 5.21 -- -- -- --
50.12 0.33 3.05 -- -- -0.0436 -- -- -0.0367 -- 0.135 34 -- --
50.33 0.331 3.05 -- -- -- -- -- -0.036 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.23 humidity 90.0 10 < th dose independent rect. 4 1
3 46.26 wind 1.0 30 > th dose independent rect. 4 1
4 46.30 wind 9.0 10 < th dose independent rect. 5 23
5 46.33 wind 7.0 1440 < th dose independent rect. 5 1
7 46.33 temperature 10.0 1440 > th dose independent rect. 5 1
10 46.33 temperature 30.0 1440 < th dose independent rect. 5 1
14 46.33 humidity 50.0 1440 > th dose independent rect. 5 1
23 46.33 atmosphere 995.0 1440 > th dose independent rect. 5 1
24 46.33 atmosphere 1015.0 1440 < th dose independent rect. 5 1
25 46.33 radiation 20.0 1440 < th dose independent rect. 5 1
34 46.33 temperature 10.0 1440 > th dose independent rect. 6 23
37 46.39 wind 3.0 30 < th dose dependent rect. 4 1
40 46.43 atmosphere 1005.0 10 > th dose dependent rect. 4 1
41 46.44 temperature 25.0 10 > th dose independent rect. 4 1
42 46.44 atmosphere 1005.0 30 > th dose independent rect. 4 1
45 46.44 temperature 25.0 30 > th dose dependent rect. 4 1
49 46.46 wind 3.0 30 < th dose independent rect. 4 1
54 46.46 temperature 30.0 30 < th dose dependent rect. 4 1
55 46.46 radiation 1.0 30 < th dose dependent rect. 4 1
57 46.47 temperature 10.0 30 > th dose independent rect. 4 1
59 46.47 temperature 30.0 30 < th dose independent rect. 4 1
60 46.47 humidity 50.0 30 > th dose independent rect. 4 1
64 46.47 atmosphere 995.0 30 > th dose independent rect. 4 1
66 46.47 atmosphere 1010.0 30 < th dose independent rect. 4 1
68 46.47 radiation 1.0 30 < th dose independent rect. 4 1
73 46.47 temperature 10.0 30 > th dose independent rect. 5 23
74 46.47 humidity 50.0 30 > th dose dependent rect. 4 1
83 46.48 precipitation 0.1 30 < th dose independent rect. 4 1
84 46.48 atmosphere 995.0 30 > th dose independent rect. 5 23
86 46.48 temperature 10.0 30 > th dose dependent rect. 4 1
88 46.48 precipitation 0.1 30 < th dose dependent rect. 4 1
91 46.49 humidity 90.0 10 < th dose dependent rect. 4 1
93 46.49 atmosphere 1015.0 30 < th dose dependent rect. 4 1
101 46.53 wind 1.0 30 > th dose dependent rect. 4 1
139 46.58 precipitation 0.1 30 < th dose independent rect. 5 23
141 46.58 precipitation 0.1 30 < th dose dependent rect. 5 23
203 47.44 radiation 1.0 30 < th dose dependent rect. 4 15
204 47.47 wind 9.0 10 > th dose independent rect. 18 1
207 47.47 wind 9.0 10 > th dose dependent rect. 18 1
219 47.54 humidity 50.0 30 > th dose independent rect. 5 23
222 47.57 atmosphere 1005.0 10 > th dose independent rect. 17 12
232 47.69 temperature 10.0 30 > th dose dependent rect. 5 23
234 47.71 radiation 1.0 10 < th dose dependent rect. 4 8
247 47.77 radiation 1.0 30 < th dose independent rect. 4 15
251 47.78 wind 9.0 30 < th dose dependent rect. 5 23
261 47.81 wind 9.0 90 > th dose dependent rect. 16 10
284 47.84 wind 9.0 270 > th dose independent rect. 13 21
289 47.85 temperature 30.0 30 < th dose independent rect. 5 23
300 47.87 wind 9.0 90 > th dose independent rect. 16 10
310 47.88 wind 9.0 90 > th dose independent sin 14 NA
320 47.89 radiation 1.0 10 < th dose independent rect. 4 8
324 47.89 wind 9.0 270 > th dose dependent rect. 13 21
328 47.90 wind 9.0 90 > th dose dependent sin 14 NA
329 47.91 wind 9.0 90 > th dose independent rect. 13 5
340 47.91 radiation 1.0 10 < th dose dependent rect. 4 23
344 47.92 radiation 1.0 10 < th dose independent rect. 4 4
369 47.93 radiation 1.0 10 < th dose dependent rect. 4 20
387 47.96 wind 9.0 90 > th dose dependent rect. 13 5
389 47.97 atmosphere 1015.0 30 < th dose independent rect. 5 23
480 48.02 wind 9.0 270 < th dose independent sin 12 NA
484 48.02 atmosphere 1005.0 90 > th dose dependent rect. 17 1
516 48.04 atmosphere 995.0 30 > th dose dependent rect. 17 12
520 48.05 wind 9.0 90 > th dose dependent rect. 13 13
610 48.08 radiation 1.0 30 < th dose dependent rect. 16 20
623 48.09 radiation 1.0 30 < th dose independent rect. 4 20
624 48.09 radiation 1.0 30 < th dose dependent rect. 16 14
699 48.13 radiation 1.0 10 < th dose independent rect. 4 23
752 48.15 atmosphere 1005.0 720 > th dose independent rect. 17 1
800 48.16 radiation 1.0 30 < th dose dependent rect. 11 19
815 48.17 radiation 1.0 30 < th dose dependent no NA NA
938 48.21 radiation 1.0 30 < th dose dependent rect. 2 22
942 48.22 atmosphere 1005.0 90 > th dose independent rect. 17 1
946 48.22 radiation 1.0 30 < th dose independent rect. 16 20
964 48.23 radiation 1.0 30 < th dose independent rect. 16 14
965 48.23 atmosphere 995.0 720 > th dose dependent rect. 17 1
975 48.24 wind 1.0 90 > th dose independent rect. 17 12
985 48.25 wind 3.0 4320 > th dose independent rect. 1 1
986 48.25 wind 3.0 4320 < th dose independent rect. 1 1
988 48.25 temperature 25.0 1440 < th dose independent rect. 2 3