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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0233100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0108) R2 : 0.643
β1 : 0.165 (0.039) R2dD : 0.0153 R2D : -0.07
β2 : -- (--) R2dC : -- R2C : --
β3 : 9.95 (0.355) R2dE : 8.04 R2E : -5.99
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 20.9 (0.824) R2dD*E : 6.54 R2D*E : -7.29
γ1 : 0.0329 (0.0223) R2dN8 : 0.00232 R2N8 : -0.0528
σ : 0.194
deviance : 17.44
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7.354
memory length : 11
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12
open length of G : 1.25

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.34 0.196 3.01 0.163 0.0389 9.93 0.0507 20.9 0.0327 9.8 7.357 7 12 0.96
155.67 0.581 2.9 0.223 0.065 9.91 0.137 -- 0.0724 9.76 7.106 7 12.1 1.88
17.35 0.194 3.01 0.165 0.0388 9.93 -- 20.9 0.0327 9.89 7.358 9 12 1.15
141.37 0.554 2.95 0.29 0.131 9.36 -- -- 0.0698 9.55 7.704 68 12 1.14
17.44 0.194 3.01 0.165 -- 9.95 -- 20.9 0.0329 -- 7.354 11 12 1.25
48.34 0.326 2.94 -0.0538 0.0736 -- -0.0516 -- 0.0147 11.1 -- -- -- --
48.36 0.326 2.94 -0.056 0.074 -- -- -- 0.0144 11 -- -- -- --
48.69 0.325 2.94 -0.0595 -- -0.0839 -- -- 0.0132 -- 9.514 75 14.6 2.26
47.44 0.323 2.94 -- 0.0504 0.362 -- -- 0.0298 10.5 6.433 141 11.3 2.17
48.7 0.326 2.94 -0.0577 -- -- -- -- 0.0139 -- -- -- -- --
48.44 0.326 2.94 -- 0.0745 -- -- -- 0.0207 11.1 -- -- -- --
46.55 0.318 2.93 -- -- 0.502 -- -- 0.0388 -- 6.578 1482 11.3 1.42
48.78 0.326 2.94 -- -- -- -- -- 0.0203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.52 wind 7 10 > th dose dependent rect. 12 1
3 23.35 wind 7 10 > th dose independent rect. 12 1
5 33.12 wind 9 270 > th dose dependent rect. 9 1
23 36.65 wind 9 270 > th dose independent rect. 9 1
123 42.85 wind 5 720 < th dose independent rect. 1 8
136 42.97 wind 5 720 > th dose dependent rect. 3 2
140 43.01 wind 5 720 > th dose independent rect. 3 2
408 44.39 wind 9 720 < th dose dependent rect. 1 8
462 44.84 wind 9 720 < th dose dependent rect. 23 10
468 44.87 humidity 90 720 < th dose dependent rect. 1 2
502 45.02 wind 5 720 > th dose independent sin 8 NA
512 45.06 wind 5 720 < th dose independent sin 7 NA
580 45.29 wind 3 720 > th dose dependent sin 8 NA
591 45.33 wind 9 1440 > th dose independent rect. 19 1
594 45.33 wind 9 1440 > th dose dependent rect. 19 1
616 45.40 atmosphere 1005 90 < th dose independent rect. 10 1
622 45.42 temperature 25 30 > th dose dependent rect. 11 1
688 45.57 wind 7 720 < th dose dependent sin 7 NA
694 45.59 wind 9 1440 > th dose dependent rect. 15 2
713 45.63 wind 9 1440 > th dose independent rect. 21 1
719 45.63 wind 9 1440 > th dose dependent rect. 21 1
727 45.65 wind 9 1440 < th dose independent rect. 14 3
747 45.67 wind 3 1440 > th dose dependent rect. 18 13
755 45.70 wind 9 1440 > th dose independent rect. 14 3
853 45.79 wind 9 1440 < th dose independent rect. 22 12
854 45.79 wind 5 1440 > th dose independent rect. 18 13
855 45.79 wind 5 1440 < th dose independent rect. 18 13
856 45.79 wind 9 1440 < th dose independent rect. 18 16
864 45.79 wind 9 1440 < th dose dependent rect. 18 13
868 45.79 wind 9 1440 > th dose dependent rect. 18 16
892 45.81 wind 7 1440 > th dose dependent rect. 19 14
897 45.82 wind 5 1440 > th dose dependent sin 12 NA
922 45.83 wind 7 1440 > th dose dependent rect. 15 19
944 45.84 wind 9 1440 > th dose dependent rect. 12 22
949 45.85 wind 9 1440 < th dose independent rect. 18 13
950 45.85 wind 9 1440 < th dose independent rect. 12 22
962 45.86 wind 9 1440 > th dose independent rect. 12 5
964 45.86 wind 9 1440 > th dose independent rect. 18 8