Os01g0232600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0232600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.21	(0.0432)	R²	:	0.104
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	5.02	(0.691)	R²_dE	:	0.103	R²_E	:	0.103
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0424	(0.0911)	R²_dN8	:	0.000669	R²_N8	:	0.000977
σ	:	0.812
deviance	:	304.28
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	18.59
memory length	:	6
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	2.77
open length of G	:	1.23

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
285.43	0.794	3.21	0.27	0.45	4.73	1.47	1.2	-0.0146	20.6	18.74	7	3.08	0.868
284.93	0.786	3.22	0.245	0.441	4.96	1.41	--	-0.0367	20.6	18.6	6	3.05	0.9
292.05	0.796	3.21	0.177	0.451	5.02	--	0.636	-0.0102	20.1	18.66	6	3.08	0.866
291.75	0.796	3.22	0.229	0.452	5.06	--	--	-0.0262	20.3	18.6	6	2.95	0.979
303.26	0.811	3.22	0.18	--	5.03	--	0.103	-0.0061	--	18.6	6	3.1	0.881
320.95	0.84	3.22	0.228	0.422	--	1.47	--	-0.0471	20.9	--	--	--	--
328.32	0.849	3.22	0.178	0.417	--	--	--	-0.0481	21	--	--	--	--
303.02	0.811	3.21	0.224	--	5.11	--	--	-0.0241	--	18.58	6	3.05	0.9
293.06	0.797	3.22	--	0.447	5.04	--	--	-0.0356	20.3	18.58	6	2.87	1.07
338.3	0.859	3.21	0.178	--	--	--	--	-0.0507	--	--	--	--	--
329.15	0.849	3.22	--	0.417	--	--	--	-0.0679	21	--	--	--	--
304.28	0.812	3.21	--	--	5.02	--	--	-0.0424	--	18.59	6	2.77	1.23
339.13	0.86	3.21	--	--	--	--	--	-0.0705	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	293.07	temperature	20.0	10	< th	dose dependent	rect.	3	1
15	301.69	humidity	90.0	90	< th	dose independent	rect.	3	1
20	302.97	humidity	90.0	90	< th	dose dependent	rect.	2	5
29	303.58	humidity	80.0	30	< th	dose dependent	rect.	18	14
34	303.89	temperature	20.0	90	< th	dose independent	rect.	2	1
41	305.33	wind	1.0	14400	< th	dose dependent	rect.	2	1
46	305.57	wind	3.0	90	> th	dose independent	rect.	1	3
66	307.17	wind	1.0	14400	< th	dose independent	rect.	2	1
80	307.78	wind	1.0	14400	> th	dose independent	rect.	2	1
88	307.89	precipitation	0.1	720	> th	dose dependent	rect.	17	1
92	307.95	humidity	80.0	90	< th	dose independent	rect.	24	7
99	308.24	radiation	20.0	270	> th	dose dependent	rect.	16	15
100	308.25	wind	1.0	270	< th	dose dependent	rect.	2	1
102	308.30	wind	3.0	90	> th	dose dependent	rect.	1	4
114	308.47	temperature	20.0	10	< th	dose dependent	rect.	2	17
143	308.92	humidity	70.0	90	< th	dose independent	rect.	19	13
167	309.56	humidity	90.0	90	< th	dose dependent	rect.	3	1
175	309.94	radiation	20.0	270	> th	dose dependent	rect.	16	1
192	309.98	humidity	80.0	30	< th	dose dependent	rect.	18	10
195	310.02	humidity	80.0	30	< th	dose dependent	rect.	18	8
205	310.18	humidity	60.0	270	< th	dose independent	rect.	16	4
221	310.21	temperature	20.0	10	< th	dose dependent	rect.	24	19
224	310.24	humidity	80.0	30	< th	dose dependent	rect.	18	4
225	310.25	atmosphere	1000.0	10	> th	dose independent	rect.	20	22
231	310.27	humidity	80.0	30	< th	dose dependent	rect.	18	2
239	310.36	temperature	20.0	270	< th	dose independent	rect.	24	1
242	310.40	atmosphere	1000.0	1440	> th	dose independent	rect.	4	1
268	310.56	radiation	10.0	30	< th	dose dependent	rect.	6	5
274	310.63	radiation	10.0	90	< th	dose dependent	rect.	8	2
278	310.66	precipitation	0.1	270	> th	dose independent	rect.	22	1
279	310.66	precipitation	0.1	270	> th	dose dependent	rect.	22	1
292	310.71	atmosphere	1000.0	1440	< th	dose independent	rect.	4	1
298	310.74	radiation	40.0	1440	> th	dose independent	rect.	11	2
307	310.85	atmosphere	1000.0	90	< th	dose independent	rect.	15	4
321	310.93	wind	7.0	10	> th	dose dependent	rect.	9	1
331	310.95	atmosphere	1000.0	10	< th	dose independent	rect.	15	4
345	310.99	atmosphere	1000.0	1440	> th	dose independent	rect.	4	5
347	311.00	wind	3.0	10	> th	dose dependent	rect.	1	4
360	311.05	atmosphere	1000.0	270	> th	dose independent	rect.	18	23
361	311.05	humidity	90.0	90	< th	dose dependent	rect.	6	1
366	311.07	atmosphere	1000.0	270	< th	dose independent	rect.	14	1
368	311.07	atmosphere	1000.0	1440	< th	dose independent	rect.	4	5
379	311.11	wind	3.0	30	> th	dose independent	rect.	6	2
382	311.11	atmosphere	1010.0	270	< th	dose dependent	rect.	15	5
385	311.13	atmosphere	1005.0	10	> th	dose dependent	rect.	7	1
391	311.16	temperature	20.0	10	< th	dose dependent	sin	5	NA
406	311.24	atmosphere	1000.0	270	< th	dose independent	rect.	12	5
416	311.27	wind	3.0	10	> th	dose dependent	rect.	2	1
441	311.36	wind	1.0	1440	< th	dose dependent	rect.	15	1
445	311.37	atmosphere	1005.0	1440	< th	dose dependent	rect.	5	1
448	311.37	atmosphere	1000.0	1440	< th	dose dependent	rect.	4	5
454	311.40	temperature	30.0	1440	< th	dose independent	rect.	7	2
466	311.44	humidity	70.0	270	< th	dose dependent	rect.	16	4
478	311.45	atmosphere	1000.0	90	< th	dose independent	rect.	14	10
484	311.47	atmosphere	1000.0	1440	> th	dose independent	rect.	7	2
488	311.48	atmosphere	1000.0	90	< th	dose independent	rect.	14	7
504	311.52	wind	1.0	30	> th	dose dependent	rect.	6	2
510	311.56	atmosphere	1000.0	30	> th	dose independent	rect.	11	15
514	311.57	radiation	30.0	1440	> th	dose independent	rect.	9	7
521	311.59	temperature	30.0	10	< th	dose independent	rect.	11	15
523	311.61	atmosphere	1000.0	1440	< th	dose independent	rect.	7	2
524	311.61	atmosphere	1010.0	10	< th	dose dependent	rect.	18	2
543	311.62	radiation	40.0	1440	> th	dose independent	rect.	11	22
544	311.63	radiation	20.0	1440	> th	dose independent	rect.	15	1
548	311.63	humidity	80.0	90	< th	dose dependent	rect.	22	9
552	311.65	temperature	30.0	1440	< th	dose independent	rect.	3	6
587	311.69	wind	3.0	10	> th	dose independent	rect.	1	4
591	311.71	atmosphere	1005.0	10	> th	dose independent	rect.	7	1
621	311.77	wind	3.0	10	> th	dose independent	rect.	2	1
624	311.77	atmosphere	1000.0	1440	> th	dose independent	rect.	4	11
631	311.78	atmosphere	1000.0	270	> th	dose independent	rect.	7	23
638	311.80	atmosphere	1000.0	1440	< th	dose independent	rect.	4	12
660	311.84	atmosphere	1000.0	1440	< th	dose independent	rect.	4	9
662	311.86	radiation	30.0	1440	> th	dose independent	sin	19	NA
696	311.91	temperature	30.0	720	< th	dose independent	rect.	22	15
697	311.91	atmosphere	1000.0	1440	< th	dose dependent	rect.	4	9
700	311.92	radiation	30.0	1440	< th	dose independent	rect.	9	7
713	311.95	atmosphere	1005.0	1440	< th	dose dependent	rect.	9	1
781	311.98	atmosphere	1000.0	90	< th	dose dependent	rect.	17	4
790	312.00	humidity	80.0	30	< th	dose dependent	sin	11	NA
802	312.02	atmosphere	1005.0	270	< th	dose independent	rect.	17	1
810	312.04	atmosphere	1000.0	10	< th	dose independent	rect.	18	2
815	312.04	atmosphere	1000.0	10	< th	dose dependent	rect.	18	2
831	312.05	atmosphere	1000.0	90	< th	dose dependent	rect.	18	1
834	312.05	wind	3.0	4320	< th	dose dependent	rect.	2	3
839	312.06	temperature	30.0	1440	> th	dose dependent	rect.	8	1
841	312.06	humidity	90.0	10	< th	dose dependent	rect.	6	2
924	312.11	temperature	30.0	14400	< th	dose independent	rect.	21	12
927	312.11	atmosphere	1000.0	1440	< th	dose dependent	rect.	15	1
929	312.11	atmosphere	1000.0	1440	< th	dose dependent	rect.	4	12
930	312.12	radiation	40.0	1440	> th	dose independent	no	NA	NA