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Os01g0232300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zinc phosphodiesterase ELAC protein 1 (EC 3.1.26.11) (Ribonuclease Z 1) (RNase Z 1) (tRNase Z 1) (tRNA 3 endonuclease 1) (ElaC homolog protein 1). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.07 | 0.376 | 10.4 | 1.07 | 1.31 | -0.354 | -0.188 | -0.412 | -0.0111 | 16.7 | 24.9 | 228 | -- | -- |
| 64.66 | 0.375 | 10.4 | 0.976 | 1.33 | -0.355 | -0.102 | -- | -0.0306 | 16.6 | 24.9 | 228 | -- | -- |
| 64.15 | 0.373 | 10.4 | 1.04 | 1.31 | -0.355 | -- | -0.335 | -0.0186 | 16.7 | 24.93 | 228 | -- | -- |
| 64.49 | 0.374 | 10.5 | 0.945 | 1.3 | -0.372 | -- | -- | -0.0547 | 16.7 | 24.91 | 226 | -- | -- |
| 117.17 | 0.504 | 10.5 | 0.715 | -- | -1.01 | -- | 0.495 | -0.339 | -- | 25.8 | 266 | -- | -- |
| 71.65 | 0.397 | 10.4 | 1.05 | 1.56 | -- | 0.152 | -- | 0.131 | 16.7 | -- | -- | -- | -- |
| 71.71 | 0.397 | 10.4 | 1.05 | 1.56 | -- | -- | -- | 0.132 | 16.7 | -- | -- | -- | -- |
| 114.51 | 0.498 | 10.5 | 0.729 | -- | -1.04 | -- | -- | -0.292 | -- | 25.71 | 218 | -- | -- |
| 87.27 | 0.435 | 10.5 | -- | 1.23 | -0.465 | -- | -- | -0.199 | 16.6 | 24.64 | 218 | -- | -- |
| 200.54 | 0.662 | 10.4 | 0.994 | -- | -- | -- | -- | 0.0911 | -- | -- | -- | -- | -- |
| 100.95 | 0.47 | 10.4 | -- | 1.54 | -- | -- | -- | 0.0145 | 16.7 | -- | -- | -- | -- |
| 127.82 | 0.527 | 10.5 | -- | -- | -1.1 | -- | -- | -0.364 | -- | 25.72 | 217 | -- | -- |
| 226.6 | 0.703 | 10.4 | -- | -- | -- | -- | -- | -0.0192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.74 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 2 | 50.15 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 6 | 51.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 7 | 51.28 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 10 | 51.91 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 11 | 52.38 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 14 | 52.47 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 16 | 52.52 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 26 | 52.92 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 31 | 53.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 45 | 53.42 | temperature | 30.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 47 | 53.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 72 | 53.85 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 73 | 53.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 74 | 53.91 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 76 | 53.92 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 94 | 54.07 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 104 | 54.25 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 127 | 54.44 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 12 |
| 146 | 54.55 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 201 | 54.97 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 215 | 55.11 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 225 | 55.24 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 337 | 55.87 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 373 | 56.11 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 374 | 56.12 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 14 |
| 420 | 56.30 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 425 | 56.33 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 435 | 56.37 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 474 | 56.57 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 498 | 56.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 499 | 56.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 505 | 56.67 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 526 | 56.72 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 539 | 56.77 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 540 | 56.77 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 559 | 56.82 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 614 | 57.00 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 653 | 57.09 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 656 | 57.09 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 658 | 57.09 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 659 | 57.09 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 660 | 57.09 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 673 | 57.13 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 680 | 57.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 683 | 57.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 686 | 57.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 687 | 57.16 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 689 | 57.16 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 692 | 57.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 699 | 57.18 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 700 | 57.18 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 702 | 57.18 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 4 | 10 |
| 723 | 57.24 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 731 | 57.26 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 773 | 57.37 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 823 | 57.50 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 827 | 57.51 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 831 | 57.51 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 835 | 57.52 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 879 | 57.66 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 914 | 57.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 961 | 57.80 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
