Os01g0229100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os01g0229100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.56 | 0.45 | 8.91 | -0.285 | 0.681 | 0.87 | 1.1 | 2.36 | 0.0489 | 23.1 | 8.616 | 123 | -- | -- |
| 98.28 | 0.462 | 8.9 | -0.209 | 0.571 | 0.599 | 0.453 | -- | 0.0761 | 22.4 | 7.256 | 128 | -- | -- |
| 94.69 | 0.453 | 8.93 | -0.277 | 0.645 | 0.944 | -- | 2 | 0.0351 | 22.8 | 19.3 | 106 | -- | -- |
| 97.43 | 0.46 | 8.9 | -0.293 | 0.607 | 0.693 | -- | -- | 0.0688 | 23 | 8.388 | 125 | -- | -- |
| 108.29 | 0.485 | 8.9 | -0.284 | -- | 0.497 | -- | 2.52 | 0.0751 | -- | 49.99 | 169 | -- | -- |
| 104.59 | 0.479 | 8.89 | -0.269 | 0.38 | -- | 0.32 | -- | 0.0891 | 20.8 | -- | -- | -- | -- |
| 104.92 | 0.48 | 8.89 | -0.28 | 0.378 | -- | -- | -- | 0.0885 | 21 | -- | -- | -- | -- |
| 104.8 | 0.477 | 8.9 | -0.302 | -- | 0.442 | -- | -- | 0.0323 | -- | 19.99 | 874 | -- | -- |
| 99.57 | 0.465 | 8.9 | -- | 0.625 | 0.718 | -- | -- | 0.0835 | 23 | 7.52 | 125 | -- | -- |
| 113.11 | 0.497 | 8.88 | -0.28 | -- | -- | -- | -- | 0.0861 | -- | -- | -- | -- | -- |
| 106.99 | 0.484 | 8.89 | -- | 0.378 | -- | -- | -- | 0.12 | 20.9 | -- | -- | -- | -- |
| 107.41 | 0.483 | 8.89 | -- | -- | 0.421 | -- | -- | 0.0597 | -- | 20.09 | 847 | -- | -- |
| 115.17 | 0.501 | 8.88 | -- | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 14 | 82.05 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 15 | 82.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 17 | 82.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 56 | 84.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 114 | 85.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 128 | 86.00 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 14 |
| 212 | 87.21 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 285 | 88.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 319 | 88.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 327 | 88.57 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 19 |
| 383 | 89.01 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 386 | 89.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 388 | 89.04 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 393 | 89.06 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 20 |
| 408 | 89.18 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 14 |
| 422 | 89.22 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 14 |
| 521 | 89.63 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 522 | 89.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 575 | 89.91 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 9 |
| 587 | 89.92 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 594 | 89.94 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 596 | 89.94 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 604 | 89.97 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 21 |
| 629 | 90.00 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 637 | 90.02 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 9 |
| 676 | 90.16 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 690 | 90.21 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 4 | 3 |
| 720 | 90.33 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 721 | 90.34 | radiation | 30 | 90 | < th | dose independent | rect. | 13 | 22 |
| 770 | 90.46 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 840 | 90.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 949 | 90.96 | radiation | 30 | 90 | < th | dose independent | rect. | 15 | 18 |