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Os01g0227800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.58 (0.323) R2 : 0.494
β1 : -9.11 (0.987) R2dD : 7.9 R2D : -21.6
β2 : 0.768 (0.0712) R2dC : 0.129 R2C : -12.8
β3 : -122 (12.9) R2dE : 563 R2E : -560
β4 : -2.16 (0.272) R2dD*C : 0.0708 R2D*C : -12.8
β5 : -364 (39.3) R2dD*E : 539 R2D*E : -539
γ1 : -0.611 (0.0647) R2dN8 : 0.135 R2N8 : -14
σ : 0.567
deviance : 145.45
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C
peak time of C : 0.201
E
wheather : radiation
threshold : 1.02
memory length : 1329
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 0.965

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.45 0.567 8.58 -9.11 0.768 -122 -2.16 -364 -0.611 0.201 1.02 1329 11.1 0.965
205.21 0.672 11.5 0.244 0.694 -1.31 -2.23 -- -0.516 23.3 1.02 1329 11.1 0.965
163.71 0.596 8.57 -9.01 0.799 -121 -- -363 -0.602 1.12 0.9528 1333 11 0.965
191.56 0.645 11.5 0.0562 0.765 -1.8 -- -- -0.596 0.605 1.859 1363 11.1 0.867
203.34 0.664 8.56 -8.97 -- -121 -- -363 -0.585 -- 0.9899 1331 11.1 0.954
206.9 0.674 11.5 0.259 0.704 -- -2.27 -- -0.511 23.3 -- -- -- --
225.46 0.703 11.5 0.343 0.753 -- -- -- -0.509 0.649 -- -- -- --
226.86 0.702 11.5 0.0322 -- -1.74 -- -- -0.601 -- 1.722 1708 11.2 0.918
191.13 0.644 11.6 -- 0.743 -1.77 -- -- -0.606 0.669 1.601 1470 11.1 0.883
260.95 0.755 11.5 0.37 -- -- -- -- -0.495 -- -- -- -- --
228.56 0.707 11.5 -- 0.758 -- -- -- -0.547 0.671 -- -- -- --
225.43 0.699 11.6 -- -- -1.78 -- -- -0.617 -- 1.506 1467 11.1 0.867
264.56 0.759 11.5 -- -- -- -- -- -0.536 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 151.69 radiation 1.0 1440 < th dose independent rect. 11 1
2 151.69 radiation 1.0 1440 < th dose dependent rect. 11 1
3 160.43 precipitation 0.1 270 > th dose independent rect. 2 2
4 160.57 precipitation 0.1 270 > th dose dependent rect. 2 2
5 162.72 atmosphere 1005.0 720 < th dose independent rect. 19 6
7 163.40 atmosphere 1005.0 10 < th dose dependent rect. 24 7
20 165.06 atmosphere 1005.0 720 < th dose independent rect. 20 1
32 165.80 radiation 1.0 1440 > th dose independent rect. 9 3
38 166.77 precipitation 0.1 270 > th dose independent rect. 24 4
42 166.99 precipitation 0.1 270 > th dose dependent rect. 24 4
51 167.49 radiation 1.0 1440 > th dose independent rect. 11 1
58 168.36 atmosphere 1005.0 720 > th dose independent rect. 20 4
62 168.64 atmosphere 1005.0 270 < th dose dependent rect. 1 1
66 169.00 temperature 20.0 270 > th dose independent rect. 11 16
76 170.09 radiation 1.0 1440 > th dose independent rect. 13 1
78 170.14 radiation 1.0 1440 < th dose independent rect. 13 1
79 170.14 radiation 1.0 1440 < th dose dependent rect. 13 1
82 170.26 radiation 1.0 1440 < th dose independent rect. 9 4
83 170.26 radiation 1.0 1440 < th dose dependent rect. 9 4
84 170.35 radiation 1.0 1440 < th dose independent rect. 11 3
85 170.35 radiation 1.0 1440 < th dose dependent rect. 11 3
110 171.37 atmosphere 1005.0 720 > th dose independent rect. 23 1
116 171.46 humidity 60.0 14400 > th dose independent rect. 20 12
120 171.58 radiation 1.0 1440 > th dose independent rect. 9 1
133 171.96 humidity 70.0 14400 < th dose dependent rect. 21 1
142 171.97 temperature 20.0 90 > th dose independent rect. 22 8
158 172.60 wind 1.0 90 < th dose dependent rect. 24 1
168 173.02 temperature 20.0 10 > th dose independent rect. 22 8
201 173.69 humidity 90.0 720 > th dose dependent rect. 20 1
206 173.87 humidity 60.0 14400 > th dose independent rect. 7 1
221 174.20 wind 1.0 1440 > th dose independent rect. 23 1
247 174.85 humidity 60.0 14400 > th dose independent rect. 24 8
257 175.24 humidity 60.0 14400 < th dose independent rect. 6 1
259 175.24 humidity 60.0 14400 < th dose independent rect. 20 1
261 175.24 radiation 20.0 14400 > th dose independent rect. 17 1
312 175.24 humidity 60.0 14400 < th dose dependent rect. 6 1
316 175.24 radiation 20.0 14400 > th dose dependent rect. 17 1
393 175.97 precipitation 0.1 270 < th dose independent rect. 15 9
395 175.97 precipitation 0.1 270 < th dose dependent rect. 15 9
396 176.02 precipitation 0.1 270 < th dose independent sin 8 NA
397 176.02 precipitation 0.1 270 < th dose dependent sin 8 NA
400 176.24 radiation 20.0 1440 < th dose dependent rect. 11 2
412 176.41 wind 1.0 270 > th dose independent rect. 15 9
414 176.43 atmosphere 995.0 270 > th dose independent rect. 24 15
416 176.52 wind 1.0 270 > th dose independent rect. 16 17
422 176.75 atmosphere 1015.0 270 < th dose independent rect. 24 15
424 176.76 humidity 50.0 270 > th dose independent rect. 24 15
425 176.78 temperature 10.0 270 > th dose independent rect. 15 9
426 176.78 temperature 10.0 270 > th dose independent rect. 24 15
430 176.93 radiation 40.0 270 < th dose independent rect. 15 9
431 176.93 wind 9.0 270 < th dose independent rect. 24 15
443 177.23 precipitation 0.1 270 < th dose independent sin 10 NA
446 177.23 precipitation 0.1 270 < th dose dependent sin 10 NA
448 177.28 wind 1.0 90 < th dose independent rect. 24 1
450 177.28 atmosphere 995.0 270 > th dose dependent rect. 16 16
457 177.42 radiation 20.0 1440 < th dose independent rect. 11 2
466 177.73 wind 9.0 270 < th dose independent rect. 15 9
467 177.73 atmosphere 1005.0 10 < th dose dependent rect. 19 13
470 177.80 humidity 60.0 14400 > th dose independent rect. 20 7
477 177.83 temperature 10.0 270 > th dose dependent rect. 10 17
484 177.89 atmosphere 1005.0 10 < th dose dependent sin 9 NA
492 178.01 wind 1.0 90 > th dose independent sin 17 NA
498 178.06 humidity 90.0 720 > th dose dependent rect. 20 3
504 178.11 wind 1.0 90 > th dose independent sin 11 NA
513 178.23 atmosphere 1010.0 10 < th dose dependent rect. 22 9
521 178.30 humidity 70.0 10 > th dose dependent sin 8 NA
532 178.39 humidity 80.0 10 > th dose dependent rect. 24 15
551 178.54 atmosphere 1005.0 720 < th dose independent sin 14 NA
554 178.58 humidity 90.0 30 > th dose independent rect. 24 8
581 178.76 humidity 90.0 10 > th dose dependent rect. 24 8
582 178.77 temperature 20.0 270 > th dose independent rect. 22 17
590 178.81 humidity 90.0 720 > th dose dependent rect. 20 5
606 178.93 atmosphere 1000.0 10 > th dose dependent rect. 19 16
697 179.46 precipitation 0.1 270 < th dose independent rect. 24 15
698 179.46 precipitation 0.1 270 < th dose dependent rect. 24 15
709 179.56 temperature 30.0 270 < th dose dependent rect. 16 17
725 179.65 precipitation 0.1 270 < th dose independent rect. 3 8
726 179.65 precipitation 0.1 270 < th dose dependent rect. 3 8
733 179.70 precipitation 0.1 270 < th dose independent rect. 15 20
735 179.70 precipitation 0.1 270 < th dose dependent rect. 15 20
750 179.79 precipitation 0.1 270 < th dose independent rect. 16 18
751 179.79 precipitation 0.1 270 < th dose dependent rect. 16 18
765 179.91 temperature 30.0 90 < th dose dependent rect. 16 9
799 180.12 radiation 1.0 90 > th dose independent rect. 5 8
829 180.24 temperature 30.0 10 < th dose dependent rect. 16 9
870 180.47 atmosphere 1015.0 270 < th dose independent rect. 11 16
878 180.52 temperature 20.0 1440 > th dose independent rect. 22 6
890 180.58 temperature 20.0 1440 < th dose independent rect. 22 6
893 180.59 radiation 1.0 90 > th dose independent sin 6 NA
899 180.62 temperature 20.0 1440 > th dose independent rect. 1 2
930 180.73 temperature 20.0 1440 < th dose independent rect. 1 2
952 180.82 atmosphere 995.0 270 > th dose independent rect. 15 9
966 180.85 humidity 90.0 10 < th dose independent rect. 23 12
990 180.98 temperature 20.0 270 > th dose independent sin 10 NA