Os01g0227200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Somatic embryogenesis receptor kinase-like protein.
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Os01g0227200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Somatic embryogenesis receptor kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.97 | 0.355 | 9.67 | -0.198 | 1.23 | -0.845 | 0.16 | 1.13 | -0.392 | 10.3 | 1010 | 7 | -- | -- |
| 57.97 | 0.357 | 9.67 | -0.221 | 1.23 | -0.772 | 0.121 | -- | -0.362 | 10.3 | 1011 | 4 | -- | -- |
| 57.01 | 0.354 | 9.67 | -0.192 | 1.23 | -0.845 | -- | 1.11 | -0.391 | 10.3 | 1010 | 5 | -- | -- |
| 58.02 | 0.355 | 9.67 | -0.22 | 1.23 | -0.761 | -- | -- | -0.361 | 10.3 | 1011 | 2 | -- | -- |
| 145.64 | 0.562 | 9.71 | -0.17 | -- | -1.1 | -- | 1.27 | -0.428 | -- | 1011 | 436 | -- | -- |
| 67.19 | 0.384 | 9.64 | -0.266 | 1.26 | -- | 0.107 | -- | -0.224 | 10.1 | -- | -- | -- | -- |
| 67.24 | 0.384 | 9.64 | -0.262 | 1.26 | -- | -- | -- | -0.224 | 10.1 | -- | -- | -- | -- |
| 147.11 | 0.565 | 9.71 | -0.205 | -- | -1.01 | -- | -- | -0.402 | -- | 1012 | 459 | -- | -- |
| 59.25 | 0.358 | 9.67 | -- | 1.24 | -0.789 | -- | -- | -0.342 | 10.3 | 1011 | 2 | -- | -- |
| 162.69 | 0.596 | 9.68 | -0.279 | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
| 69.05 | 0.389 | 9.64 | -- | 1.26 | -- | -- | -- | -0.195 | 10.2 | -- | -- | -- | -- |
| 148.2 | 0.567 | 9.71 | -- | -- | -1.04 | -- | -- | -0.384 | -- | 1012 | 468 | -- | -- |
| 164.75 | 0.599 | 9.67 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.95 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 13 |
| 2 | 51.02 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 8 |
| 5 | 51.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 21 | 52.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 52 | 53.20 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 76 | 53.62 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 109 | 54.21 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 120 | 54.38 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 137 | 54.57 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 144 | 54.63 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 157 | 54.72 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 178 | 54.88 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 208 | 55.05 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 217 | 55.14 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 247 | 55.30 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 289 | 55.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 7 |
| 388 | 55.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 413 | 56.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 430 | 56.12 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 2 | 8 |
| 431 | 56.12 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 512 | 56.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 14 |
| 515 | 56.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 555 | 56.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 11 |
| 598 | 56.50 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 601 | 56.51 | atmosphere | 1015 | 10 | < th | dose dependent | sin | 3 | NA |
| 627 | 56.56 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 665 | 56.63 | atmosphere | 995 | 10 | > th | dose dependent | sin | 2 | NA |
| 725 | 56.71 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 739 | 56.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 769 | 56.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 21 |
| 818 | 56.83 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 910 | 56.94 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 918 | 56.95 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 949 | 57.00 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 972 | 57.02 | atmosphere | 1010 | 10 | < th | dose dependent | no | NA | NA |
| 980 | 57.03 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 9 | 5 |