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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0226600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C4-dicarboxylate transporter/malic acid transport protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.33 (0.0382) R2 : 0.932
β1 : -- (--) R2dD : -- R2D : --
β2 : 7.92 (0.16) R2dC : 1 R2C : -1.46
β3 : 13.5 (0.176) R2dE : 2.39 R2E : -0.0814
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.467 (0.0804) R2dN8 : 0.00669 R2N8 : 0.0014
σ : 0.717
deviance : 237.18
__
_____
C
peak time of C : 15.7
E
wheather : wind
threshold : 7.701
memory length : 712
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 10.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.73 0.704 7.32 0.536 8.15 13.5 2.11 2.53 -0.422 15.8 7.839 722 19 10
230.28 0.707 7.29 0.574 7.99 13.4 0.799 -- -0.36 15.7 7.9 709 19 10.2
231.04 0.708 7.31 0.486 8.15 13.5 -- 0.864 -0.386 15.7 7.898 712 19 10.1
230.55 0.707 7.31 0.511 8.06 13.6 -- -- -0.374 15.7 8 712 19 10.2
282.3 0.783 7.19 0.537 -- 6.76 -- 2.41 -0.315 -- 14.78 694 18.3 16.9
289.49 0.798 7.02 0.556 7.52 -- 1.5 -- -0.331 8.45 -- -- -- --
296.63 0.807 7.02 0.602 7.52 -- -- -- -0.332 8.45 -- -- -- --
282.52 0.783 7.19 0.601 -- 6.78 -- -- -0.247 -- 15.94 691 18.3 16.9
237.18 0.717 7.33 -- 7.92 13.5 -- -- -0.467 15.7 7.701 712 19 10.2
3455.71 2.75 7.21 0.639 -- -- -- -- -0.257 -- -- -- -- --
306.17 0.819 7.03 -- 7.53 -- -- -- -0.399 8.44 -- -- -- --
291.47 0.795 7.24 -- -- 6.78 -- -- -0.349 -- 13.37 688 18.3 16.9
3466.47 2.75 7.23 -- -- -- -- -- -0.328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.09 wind 9.0 720 < th dose independent rect. 19 10
2 230.31 wind 9.0 720 < th dose independent rect. 17 14
3 231.02 radiation 20.0 720 < th dose independent rect. 17 14
4 231.53 radiation 1.0 720 < th dose dependent rect. 19 10
6 232.57 radiation 1.0 720 < th dose independent rect. 19 10
11 233.16 temperature 10.0 720 > th dose independent rect. 19 10
12 233.16 temperature 30.0 720 < th dose independent rect. 19 10
13 233.16 humidity 50.0 720 > th dose independent rect. 19 10
14 233.16 atmosphere 995.0 720 > th dose independent rect. 19 10
18 233.16 temperature 10.0 720 > th dose independent rect. 5 14
19 233.16 atmosphere 1015.0 720 < th dose independent rect. 5 14
21 233.53 temperature 10.0 720 > th dose independent rect. 7 10
22 233.53 atmosphere 1015.0 720 < th dose independent rect. 7 10
23 233.53 temperature 10.0 720 > th dose independent rect. 17 14
25 234.16 atmosphere 1000.0 90 > th dose independent rect. 16 11
27 234.81 radiation 10.0 10 > th dose independent rect. 12 5
28 234.87 temperature 10.0 720 > th dose independent rect. 15 10
29 234.87 temperature 10.0 720 > th dose independent rect. 1 14
31 235.56 temperature 10.0 720 > th dose independent rect. 3 10
32 235.56 atmosphere 995.0 720 > th dose independent rect. 3 10
33 235.56 temperature 10.0 720 > th dose independent rect. 13 14
34 235.76 precipitation 0.1 720 < th dose independent rect. 7 10
35 235.76 precipitation 0.1 720 < th dose dependent rect. 7 10
36 235.90 atmosphere 1000.0 10 > th dose independent rect. 16 12
38 236.12 temperature 15.0 270 > th dose independent rect. 6 12
39 236.69 radiation 10.0 10 > th dose independent rect. 12 19
40 236.70 radiation 40.0 720 < th dose independent rect. 15 10
42 237.20 wind 7.0 270 < th dose independent rect. 18 12
43 237.28 radiation 1.0 720 < th dose dependent rect. 3 2
46 237.38 wind 7.0 720 < th dose independent rect. 3 2
49 237.74 precipitation 0.1 270 < th dose independent rect. 2 12
50 237.74 precipitation 0.1 270 < th dose dependent rect. 2 12
69 238.19 radiation 1.0 720 < th dose independent rect. 3 2
76 238.69 temperature 10.0 720 > th dose independent rect. 3 2
77 238.69 temperature 30.0 720 < th dose independent rect. 3 2
78 238.69 humidity 50.0 720 > th dose independent rect. 3 2
81 238.69 atmosphere 995.0 720 > th dose independent rect. 3 2
85 238.69 temperature 10.0 720 > th dose independent rect. 5 22
87 238.82 radiation 1.0 10 > th dose dependent rect. 12 19
89 238.96 temperature 15.0 720 > th dose independent rect. 15 2
90 239.06 temperature 15.0 720 > th dose independent rect. 6 4
92 239.18 atmosphere 1015.0 720 < th dose independent rect. 15 2
93 239.18 temperature 10.0 720 > th dose independent rect. 17 22
94 239.26 radiation 1.0 720 < th dose dependent rect. 21 6
95 239.27 temperature 10.0 720 > th dose independent rect. 21 6
96 239.27 temperature 30.0 720 < th dose independent rect. 21 6
97 239.27 humidity 50.0 720 > th dose independent rect. 21 6
100 239.27 atmosphere 995.0 720 > th dose independent rect. 21 6
101 239.27 radiation 1.0 720 < th dose independent rect. 21 6
106 239.27 temperature 10.0 720 > th dose independent rect. 3 18
111 239.31 wind 7.0 720 < th dose independent rect. 18 4
112 239.34 wind 9.0 270 < th dose independent rect. 6 12
114 239.34 wind 9.0 720 < th dose independent rect. 1 14
115 239.35 temperature 10.0 720 > th dose independent rect. 9 6
116 239.35 atmosphere 1015.0 720 < th dose independent rect. 9 6
117 239.35 temperature 10.0 720 > th dose independent rect. 15 18
118 239.41 humidity 80.0 10 < th dose independent rect. 12 4
119 239.53 wind 9.0 720 < th dose independent rect. 3 10
120 239.79 wind 7.0 720 < th dose independent rect. 2 4
122 239.88 radiation 30.0 270 < th dose dependent rect. 18 12
124 239.92 precipitation 0.1 720 < th dose independent rect. 15 2
125 239.92 precipitation 0.1 720 < th dose dependent rect. 15 2
127 239.96 temperature 25.0 10 > th dose independent rect. 12 4
128 240.02 radiation 40.0 720 < th dose independent rect. 15 2
131 240.17 temperature 10.0 270 > th dose independent rect. 18 12
132 240.17 humidity 50.0 270 > th dose independent rect. 18 12
133 240.17 atmosphere 1015.0 270 < th dose independent rect. 6 12
134 240.17 radiation 20.0 270 < th dose independent rect. 18 12
138 240.36 precipitation 0.1 720 < th dose independent rect. 6 12
139 240.36 precipitation 0.1 720 < th dose dependent rect. 6 12
140 240.38 precipitation 0.1 720 < th dose independent rect. 3 2
141 240.38 precipitation 0.1 720 < th dose dependent rect. 3 2
147 240.65 precipitation 0.1 720 < th dose independent rect. 5 14
148 240.65 precipitation 0.1 720 < th dose dependent rect. 5 14
149 240.69 radiation 10.0 270 > th dose independent rect. 11 2
150 240.70 temperature 20.0 10 > th dose dependent rect. 12 4
152 241.02 radiation 30.0 90 < th dose independent rect. 15 12
154 241.09 wind 9.0 720 < th dose independent rect. 17 22
164 241.37 precipitation 0.1 720 < th dose independent rect. 5 6
165 241.37 precipitation 0.1 720 < th dose dependent rect. 5 6
171 241.54 atmosphere 1015.0 720 < th dose independent rect. 18 4
172 241.54 wind 9.0 720 < th dose independent rect. 17 6
173 241.71 precipitation 0.1 720 < th dose independent rect. 21 6
174 241.71 precipitation 0.1 720 < th dose dependent rect. 21 6
175 241.77 precipitation 0.1 270 < th dose independent rect. 18 12
176 241.77 precipitation 0.1 270 < th dose dependent rect. 18 12
199 241.90 precipitation 0.1 720 < th dose independent rect. 9 6
200 241.90 precipitation 0.1 720 < th dose dependent rect. 9 6
201 241.93 wind 9.0 720 < th dose independent rect. 21 6
203 242.01 wind 1.0 720 > th dose independent rect. 15 2
211 242.20 atmosphere 1015.0 720 < th dose independent rect. 3 18
215 242.28 precipitation 0.1 720 < th dose independent rect. 2 4
216 242.28 precipitation 0.1 720 < th dose dependent rect. 2 4
218 242.40 temperature 15.0 270 > th dose independent rect. 22 12
220 242.42 precipitation 0.1 720 < th dose independent rect. 6 4
221 242.42 wind 9.0 720 < th dose independent rect. 5 6
222 242.42 precipitation 0.1 720 < th dose dependent rect. 6 4
234 242.49 atmosphere 995.0 270 > th dose independent rect. 18 12
235 242.50 wind 7.0 720 < th dose independent rect. 6 4
239 242.53 atmosphere 1015.0 270 < th dose independent rect. 10 12
248 242.77 atmosphere 995.0 720 > th dose independent rect. 15 2
252 242.92 wind 9.0 720 < th dose independent rect. 9 6
257 243.06 temperature 15.0 90 > th dose independent rect. 16 11
262 243.15 temperature 10.0 270 > th dose independent rect. 2 12
264 243.15 atmosphere 995.0 270 > th dose independent rect. 2 12
265 243.15 atmosphere 1015.0 270 < th dose independent rect. 2 12
269 243.20 precipitation 0.1 720 < th dose independent rect. 3 10
270 243.20 precipitation 0.1 720 < th dose dependent rect. 3 10
272 243.22 atmosphere 995.0 90 > th dose dependent rect. 16 11
277 243.31 atmosphere 995.0 720 > th dose independent rect. 6 4
278 243.31 atmosphere 1015.0 720 < th dose independent rect. 6 4
279 243.31 temperature 10.0 720 > th dose independent rect. 10 20
281 243.32 atmosphere 995.0 720 > th dose independent rect. 5 6
282 243.32 atmosphere 1015.0 720 < th dose independent rect. 5 6
284 243.32 temperature 10.0 720 > th dose independent rect. 11 18
290 243.53 atmosphere 1015.0 720 < th dose independent rect. 11 10
291 243.54 temperature 10.0 720 > th dose independent rect. 18 4
292 243.54 humidity 50.0 720 > th dose independent rect. 18 4
293 243.54 radiation 20.0 720 < th dose independent rect. 18 4
296 243.54 temperature 10.0 720 > th dose independent rect. 22 20
308 243.72 wind 7.0 720 < th dose independent rect. 1 6
309 243.75 humidity 50.0 720 > th dose independent rect. 6 4
311 243.84 wind 9.0 720 < th dose independent rect. 10 20
317 244.11 atmosphere 1015.0 720 < th dose independent rect. 3 10
318 244.12 radiation 20.0 720 < th dose independent rect. 17 6
320 244.15 precipitation 0.1 270 < th dose independent rect. 14 11
321 244.15 precipitation 0.1 270 < th dose dependent rect. 14 11
322 244.17 radiation 1.0 30 > th dose dependent rect. 12 4
323 244.19 temperature 10.0 720 > th dose independent rect. 17 6
326 244.19 temperature 10.0 720 > th dose independent rect. 23 18
328 244.21 wind 7.0 10 < th dose independent rect. 12 19
329 244.22 temperature 30.0 270 < th dose independent rect. 18 12
330 244.23 radiation 40.0 720 < th dose dependent rect. 18 4
341 244.44 wind 7.0 720 < th dose independent rect. 19 2
343 244.47 radiation 20.0 720 < th dose independent rect. 1 6
356 244.55 atmosphere 1015.0 720 < th dose independent rect. 3 2
358 244.59 wind 1.0 720 > th dose independent rect. 14 4
372 244.90 humidity 90.0 10 < th dose dependent rect. 12 4
382 245.01 wind 9.0 270 < th dose independent rect. 14 11
384 245.05 radiation 40.0 720 < th dose independent rect. 15 18
393 245.20 wind 9.0 90 < th dose independent rect. 16 11
403 245.42 wind 9.0 720 < th dose independent rect. 15 2
405 245.43 temperature 10.0 270 > th dose independent rect. 10 12
407 245.43 atmosphere 995.0 270 > th dose independent rect. 22 12
409 245.48 wind 9.0 270 < th dose independent rect. 22 12
410 245.48 radiation 20.0 10 < th dose dependent rect. 7 21
437 245.86 precipitation 0.1 720 < th dose independent rect. 22 20
438 245.86 precipitation 0.1 720 < th dose dependent rect. 22 20
439 245.88 humidity 50.0 270 > th dose independent rect. 22 12
442 245.92 wind 9.0 720 < th dose independent rect. 3 18
459 246.35 wind 9.0 90 < th dose independent rect. 3 13
460 246.37 radiation 10.0 10 < th dose independent rect. 8 20
478 246.50 temperature 10.0 720 > th dose independent rect. 11 10
479 246.50 temperature 10.0 720 > th dose independent rect. 21 14
480 246.50 atmosphere 995.0 720 > th dose independent rect. 21 14
485 246.60 precipitation 0.1 10 < th dose independent rect. 3 13
486 246.60 precipitation 0.1 10 < th dose dependent rect. 3 13
495 246.75 humidity 70.0 720 > th dose independent rect. 1 6
500 246.80 radiation 10.0 10 < th dose independent rect. 12 16
501 246.81 temperature 10.0 720 > th dose independent rect. 1 6
502 246.81 temperature 30.0 720 < th dose independent rect. 1 6
503 246.81 humidity 50.0 720 > th dose independent rect. 1 6
505 246.81 atmosphere 995.0 720 > th dose independent rect. 1 6
507 246.81 temperature 10.0 720 > th dose independent rect. 7 18
519 246.89 precipitation 0.1 90 < th dose independent rect. 16 11
520 246.89 precipitation 0.1 90 < th dose dependent rect. 16 11
523 246.91 temperature 10.0 720 > th dose independent rect. 23 10
524 246.91 humidity 50.0 720 > th dose independent rect. 23 10
525 246.91 atmosphere 995.0 720 > th dose independent rect. 23 10
527 246.91 temperature 10.0 720 > th dose independent rect. 9 14
531 246.97 humidity 50.0 720 > th dose dependent rect. 3 2
541 247.18 wind 9.0 720 < th dose independent rect. 23 10
548 247.36 humidity 50.0 720 > th dose independent rect. 3 10
549 247.36 atmosphere 1015.0 90 < th dose independent rect. 19 12
554 247.46 atmosphere 995.0 720 > th dose independent rect. 6 11
557 247.59 wind 9.0 720 < th dose independent rect. 19 18
562 247.63 atmosphere 1015.0 720 < th dose independent rect. 19 2
563 247.63 temperature 10.0 720 > th dose independent rect. 13 6
564 247.63 atmosphere 1015.0 720 < th dose independent rect. 13 6
565 247.63 temperature 10.0 720 > th dose independent rect. 19 18
566 247.63 atmosphere 995.0 720 > th dose independent rect. 19 18
567 247.66 precipitation 0.1 720 < th dose independent rect. 18 4
569 247.66 precipitation 0.1 720 < th dose dependent rect. 18 4
573 247.75 radiation 1.0 10 > th dose dependent sin 14 NA
575 247.79 wind 9.0 270 < th dose dependent rect. 7 1
602 247.88 radiation 10.0 10 < th dose independent rect. 16 12
603 247.96 atmosphere 995.0 720 > th dose dependent rect. 15 2
604 247.97 atmosphere 995.0 720 > th dose independent rect. 18 20
605 247.98 temperature 15.0 10 > th dose independent rect. 16 12
616 248.31 atmosphere 995.0 720 > th dose independent rect. 18 4
625 248.43 temperature 10.0 10 > th dose independent rect. 4 12
628 248.43 atmosphere 1015.0 10 < th dose independent rect. 4 12
629 248.43 radiation 40.0 10 < th dose independent rect. 16 12
630 248.44 humidity 50.0 10 > th dose independent rect. 16 12
631 248.48 precipitation 0.1 720 < th dose independent rect. 19 10
632 248.48 precipitation 0.1 720 < th dose dependent rect. 19 10
637 248.52 wind 9.0 720 < th dose independent rect. 21 14
650 248.55 radiation 40.0 90 < th dose dependent rect. 15 12
658 248.62 temperature 25.0 270 > th dose independent rect. 12 1
660 248.62 wind 9.0 270 < th dose independent rect. 10 12
666 248.70 radiation 1.0 720 > th dose independent rect. 6 4
677 248.81 precipitation 0.1 10 < th dose independent rect. 16 11
678 248.81 precipitation 0.1 10 < th dose dependent rect. 16 11
681 248.88 temperature 10.0 270 > th dose dependent rect. 11 2
685 249.01 radiation 10.0 10 > th dose independent sin 16 NA
686 249.01 wind 1.0 720 > th dose independent rect. 18 4
688 249.08 radiation 40.0 10 < th dose dependent rect. 16 12
690 249.10 precipitation 0.1 270 < th dose independent rect. 7 1
693 249.10 precipitation 0.1 270 < th dose dependent rect. 7 1
711 249.23 wind 7.0 270 < th dose independent rect. 7 1
713 249.24 temperature 10.0 270 > th dose independent rect. 7 1
715 249.24 temperature 30.0 270 < th dose independent rect. 7 1
716 249.24 humidity 50.0 270 > th dose independent rect. 7 1
718 249.24 atmosphere 995.0 270 > th dose independent rect. 7 1
719 249.24 atmosphere 1015.0 270 < th dose independent rect. 7 1
720 249.24 temperature 10.0 270 > th dose independent rect. 8 23
740 249.46 radiation 10.0 10 < th dose independent sin 16 NA
741 249.46 radiation 40.0 270 < th dose independent rect. 7 1
745 249.60 radiation 1.0 720 > th dose independent rect. 15 2
748 249.63 wind 7.0 10 < th dose independent rect. 7 5
760 249.82 atmosphere 1010.0 270 < th dose independent rect. 11 2
801 249.98 temperature 15.0 10 > th dose independent rect. 16 20
809 250.05 temperature 10.0 10 > th dose dependent rect. 4 12
816 250.06 wind 9.0 10 < th dose independent rect. 16 12
825 250.08 atmosphere 995.0 720 > th dose independent rect. 10 4
828 250.08 atmosphere 1000.0 10 > th dose independent rect. 7 21
830 250.10 humidity 50.0 720 > th dose independent rect. 21 14
832 250.11 wind 3.0 10 > th dose independent rect. 12 4
834 250.12 radiation 40.0 10 < th dose dependent sin 15 NA
835 250.15 radiation 1.0 720 > th dose independent rect. 7 2
839 250.19 humidity 90.0 720 < th dose independent rect. 15 2
881 250.39 wind 9.0 10 < th dose independent rect. 16 20
896 250.54 atmosphere 995.0 720 > th dose independent rect. 22 20
898 250.57 temperature 15.0 270 > th dose independent rect. 13 22
915 250.62 wind 9.0 10 < th dose dependent rect. 7 5
926 250.65 temperature 30.0 720 < th dose independent rect. 23 10
953 250.78 wind 9.0 720 < th dose independent rect. 7 10
956 250.82 precipitation 0.1 270 < th dose independent rect. 10 12
957 250.82 precipitation 0.1 270 < th dose dependent rect. 10 12
959 250.84 temperature 10.0 720 > th dose independent rect. 19 2
960 250.84 temperature 30.0 720 < th dose independent rect. 19 2
961 250.84 humidity 50.0 720 > th dose independent rect. 19 2
962 250.84 atmosphere 995.0 720 > th dose independent rect. 19 2
963 250.84 radiation 1.0 720 < th dose independent rect. 19 2
969 250.84 temperature 10.0 720 > th dose independent rect. 21 22
970 250.84 radiation 1.0 720 < th dose dependent rect. 19 2
978 250.87 wind 7.0 10 < th dose independent rect. 19 12
980 250.92 wind 9.0 10 < th dose independent rect. 12 4
985 250.96 atmosphere 1015.0 10 < th dose independent rect. 12 19
992 250.98 temperature 10.0 10 > th dose independent rect. 12 4
994 250.98 atmosphere 1015.0 10 < th dose independent rect. 12 4
995 250.98 precipitation 0.1 10 < th dose independent rect. 12 4
997 250.98 precipitation 0.1 10 < th dose dependent rect. 12 4