Os01g0225600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Late embryogenesis abundant protein Lea14-A.
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Os01g0225600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Late embryogenesis abundant protein Lea14-A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 206.6 | 0.675 | 8.33 | -0.812 | 0.907 | -2.08 | 0.824 | -0.115 | -0.689 | 7.33 | 22 | 1036 | -- | -- |
| 206.51 | 0.669 | 8.33 | -0.808 | 0.91 | -2.04 | 0.851 | -- | -0.678 | 7.34 | 22.01 | 1033 | -- | -- |
| 208.32 | 0.672 | 8.34 | -0.845 | 0.902 | -2.08 | -- | -0.273 | -0.704 | 7.4 | 22 | 1028 | -- | -- |
| 208.45 | 0.672 | 8.33 | -0.799 | 0.885 | -2.03 | -- | -- | -0.685 | 7.4 | 22.03 | 1000 | -- | -- |
| 241.36 | 0.724 | 8.35 | -0.787 | -- | -2.13 | -- | -0.0877 | -0.669 | -- | 22 | 804 | -- | -- |
| 368.58 | 0.9 | 8.47 | -1.53 | 1.09 | -- | 0.645 | -- | -1.34 | 8.35 | -- | -- | -- | -- |
| 369.85 | 0.901 | 8.47 | -1.51 | 1.09 | -- | -- | -- | -1.34 | 8.43 | -- | -- | -- | -- |
| 241.43 | 0.724 | 8.35 | -0.778 | -- | -2.13 | -- | -- | -0.658 | -- | 21.96 | 802 | -- | -- |
| 222.56 | 0.695 | 8.31 | -- | 0.927 | -2.21 | -- | -- | -0.596 | 7.39 | 22 | 1109 | -- | -- |
| 435.72 | 0.975 | 8.5 | -1.51 | -- | -- | -- | -- | -1.33 | -- | -- | -- | -- | -- |
| 430.24 | 0.97 | 8.43 | -- | 1.08 | -- | -- | -- | -1.17 | 8.53 | -- | -- | -- | -- |
| 254.38 | 0.743 | 8.32 | -- | -- | -2.36 | -- | -- | -0.545 | -- | 21.76 | 845 | -- | -- |
| 495.71 | 1.04 | 8.46 | -- | -- | -- | -- | -- | -1.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 2 | 220.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 46 | 222.83 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 48 | 222.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 52 | 222.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 93 | 224.17 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 95 | 224.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 108 | 224.44 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 112 | 224.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 116 | 224.60 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 124 | 224.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 125 | 224.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 209 | 225.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 245 | 226.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 256 | 226.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 346 | 227.95 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 449 | 229.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 565 | 230.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 726 | 233.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 737 | 233.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 767 | 233.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 928 | 235.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 968 | 236.01 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |