Os01g0225300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0225300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.48 | 0.291 | 10.3 | -0.0688 | 0.524 | 0.746 | 0.295 | 1.76 | -0.222 | 8.84 | 19.67 | 589 | -- | -- |
| 40.92 | 0.298 | 10.4 | -0.33 | 0.502 | 0.902 | -0.0389 | -- | -0.313 | 7.51 | 20.37 | 364 | -- | -- |
| 38.66 | 0.29 | 10.4 | -0.127 | 0.516 | 0.781 | -- | 1.53 | -0.242 | 8.58 | 19 | 536 | -- | -- |
| 40.54 | 0.297 | 10.4 | -0.395 | 0.519 | 0.862 | -- | -- | -0.313 | 7.89 | 19.96 | 426 | -- | -- |
| 45.25 | 0.315 | 10.4 | -0.178 | -- | 0.699 | -- | 1.13 | -0.242 | -- | 19 | 536 | -- | -- |
| 53.82 | 0.344 | 10.4 | -0.212 | 0.296 | -- | -0.0696 | -- | -0.174 | 10.3 | -- | -- | -- | -- |
| 53.83 | 0.344 | 10.4 | -0.215 | 0.296 | -- | -- | -- | -0.174 | 10.4 | -- | -- | -- | -- |
| 46.66 | 0.32 | 10.4 | -0.37 | -- | 0.75 | -- | -- | -0.297 | -- | 19 | 536 | -- | -- |
| 44.5 | 0.311 | 10.4 | -- | 0.5 | 0.725 | -- | -- | -0.257 | 8.36 | 21.54 | 463 | -- | -- |
| 59.18 | 0.359 | 10.4 | -0.22 | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
| 55.05 | 0.347 | 10.4 | -- | 0.297 | -- | -- | -- | -0.15 | 10.4 | -- | -- | -- | -- |
| 49.97 | 0.329 | 10.4 | -- | -- | 0.659 | -- | -- | -0.244 | -- | 19.83 | 3 | -- | -- |
| 60.46 | 0.363 | 10.4 | -- | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.57 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 6 | 38.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 9 | 38.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 15 | 38.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 22 | 38.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 28 | 38.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 29 | 38.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 45 | 38.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 51 | 38.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 87 | 38.91 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 96 | 38.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 190 | 39.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 208 | 39.38 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 215 | 39.40 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 220 | 39.43 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 283 | 39.63 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 363 | 39.85 | temperature | 20 | 720 | > th | dose dependent | sin | 22 | NA |
| 390 | 39.89 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 446 | 39.98 | temperature | 30 | 720 | > th | dose independent | sin | 1 | NA |
| 505 | 40.05 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 9 |
| 512 | 40.06 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 538 | 40.07 | temperature | 30 | 720 | > th | dose dependent | sin | 2 | NA |
| 594 | 40.13 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 15 |
| 599 | 40.13 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 652 | 40.17 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 732 | 40.23 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 23 |
| 740 | 40.24 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 872 | 40.28 | temperature | 25 | 270 | > th | dose dependent | sin | 13 | NA |
| 888 | 40.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 913 | 40.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 938 | 40.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 950 | 40.38 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |