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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0224000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0146) R2 : 0.00428
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0431 (0.0308) R2dN8 : 0.00553 R2N8 : 0.00428
σ : 0.276
deviance : 34.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.05 0.27 3.09 0.117 0.0767 0.179 0.0663 0.777 0.0251 9.78 90 5899 -- --
33.82 0.271 3.09 0.0748 0.1 0.216 0.0681 -- 0.00136 9.56 96.16 4979 -- --
33.06 0.268 3.09 0.12 0.0765 0.179 -- 0.778 0.0249 9.63 90.05 5900 -- --
33.76 0.271 3.09 0.0656 0.0764 0.24 -- -- 0.00144 9.55 96.9 4247 -- --
33.41 0.269 3.09 0.118 -- 0.181 -- 0.766 0.0246 -- 90 5900 -- --
34.44 0.275 3.08 0.0543 0.0749 -- 0.0641 -- 0.0492 9.76 -- -- -- --
34.46 0.275 3.08 0.0566 0.075 -- -- -- 0.0492 9.6 -- -- -- --
34.08 0.272 3.09 0.0675 -- 0.24 -- -- -0.00145 -- 109.9 4353 -- --
33.88 0.271 3.09 -- 0.0763 0.231 -- -- -0.00571 9.6 126.2 4250 -- --
34.79 0.276 3.08 0.0561 -- -- -- -- 0.0494 -- -- -- -- --
34.54 0.275 3.08 -- 0.0749 -- -- -- 0.0429 9.54 -- -- -- --
34.2 0.272 3.1 -- -- 0.233 -- -- -0.00746 -- 114.1 4353 -- --
34.87 0.276 3.08 -- -- -- -- -- 0.0431 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.13 wind 1.0 30 < th dose independent rect. 10 1
2 32.13 temperature 10.0 1440 > th dose independent rect. 11 1
6 32.13 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 32.13 precipitation 0.1 1440 < th dose independent rect. 11 1
10 32.13 temperature 10.0 1440 > th dose independent rect. 12 23
13 32.13 wind 1.0 30 < th dose dependent rect. 10 1
14 32.13 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 32.31 atmosphere 1010.0 30 < th dose independent rect. 10 1
16 32.33 humidity 70.0 30 < th dose independent rect. 10 1
17 32.34 temperature 25.0 30 > th dose dependent rect. 10 1
18 32.35 radiation 40.0 30 < th dose independent rect. 10 1
21 32.45 atmosphere 1005.0 30 > th dose independent rect. 10 1
22 32.45 humidity 70.0 30 < th dose dependent rect. 10 1
24 32.48 temperature 25.0 30 > th dose independent rect. 10 1
25 32.48 radiation 20.0 30 > th dose independent rect. 10 1
28 32.50 atmosphere 995.0 30 > th dose dependent rect. 10 1
31 32.53 radiation 40.0 30 < th dose dependent rect. 10 1
33 32.54 temperature 30.0 30 < th dose independent rect. 10 1
35 32.56 wind 7.0 30 < th dose dependent rect. 10 1
41 32.57 humidity 60.0 30 > th dose independent rect. 10 1
45 32.59 temperature 10.0 30 > th dose independent rect. 10 1
48 32.59 humidity 90.0 30 < th dose independent rect. 10 1
52 32.59 precipitation 0.1 30 < th dose independent rect. 10 1
53 32.59 temperature 10.0 30 > th dose independent rect. 11 23
54 32.59 precipitation 0.1 30 < th dose dependent rect. 10 1
55 32.61 wind 1.0 30 > th dose independent rect. 10 1
58 32.66 atmosphere 1000.0 10 > th dose independent rect. 21 23
60 32.74 radiation 1.0 30 > th dose dependent rect. 10 1
61 32.76 humidity 50.0 30 > th dose dependent rect. 10 1
62 32.77 humidity 80.0 14400 < th dose dependent rect. 3 6
65 32.80 humidity 80.0 14400 < th dose dependent rect. 20 14
70 32.83 humidity 70.0 14400 > th dose independent rect. 19 14
72 32.83 humidity 80.0 14400 < th dose dependent rect. 23 11
77 32.86 humidity 70.0 14400 > th dose independent rect. 7 3
88 32.86 atmosphere 1015.0 30 < th dose dependent rect. 10 1
93 32.88 humidity 70.0 14400 < th dose independent rect. 8 2
94 32.88 humidity 70.0 14400 < th dose independent rect. 20 14
107 32.89 wind 1.0 30 > th dose dependent rect. 10 1
126 32.99 humidity 70.0 4320 > th dose independent rect. 10 1
134 33.02 wind 3.0 14400 > th dose independent rect. 19 1
135 33.02 humidity 70.0 4320 < th dose independent rect. 10 1
159 33.05 humidity 80.0 14400 < th dose dependent sin 8 NA
160 33.05 humidity 80.0 4320 > th dose dependent rect. 7 2
161 33.05 humidity 50.0 4320 > th dose dependent rect. 11 2
165 33.06 humidity 80.0 90 < th dose independent rect. 2 1
166 33.06 humidity 90.0 10 < th dose independent rect. 3 1
172 33.06 humidity 80.0 90 < th dose dependent rect. 2 1
173 33.06 humidity 90.0 10 < th dose dependent rect. 3 1
175 33.06 humidity 50.0 14400 > th dose dependent rect. 7 2
196 33.09 humidity 70.0 4320 > th dose independent rect. 8 7
200 33.10 wind 3.0 14400 < th dose independent rect. 19 1
215 33.10 humidity 70.0 4320 > th dose independent rect. 5 10
228 33.10 humidity 70.0 4320 > th dose independent rect. 20 19
231 33.10 humidity 80.0 4320 < th dose dependent rect. 12 1
247 33.11 humidity 70.0 4320 < th dose independent rect. 8 7
266 33.12 humidity 70.0 4320 < th dose independent rect. 8 9
278 33.12 wind 1.0 14400 < th dose dependent rect. 6 1
280 33.12 radiation 10.0 43200 < th dose dependent rect. 21 1
286 33.12 humidity 80.0 90 < th dose dependent rect. 24 3
289 33.13 humidity 70.0 4320 > th dose independent sin 2 NA
362 33.13 humidity 50.0 4320 > th dose dependent rect. 23 16
425 33.14 humidity 50.0 4320 > th dose dependent rect. 3 12
430 33.14 humidity 90.0 4320 < th dose dependent rect. 23 16
440 33.15 humidity 70.0 4320 < th dose independent sin 1 NA
500 33.15 humidity 50.0 4320 > th dose dependent rect. 5 10
546 33.16 humidity 50.0 4320 > th dose dependent sin 4 NA
607 33.17 humidity 70.0 4320 > th dose independent rect. 16 23
643 33.17 humidity 90.0 4320 < th dose dependent rect. 6 10
645 33.17 humidity 90.0 4320 < th dose dependent rect. 4 11
662 33.18 wind 3.0 30 > th dose independent rect. 20 1
663 33.18 temperature 15.0 1440 > th dose independent rect. 21 1
717 33.18 humidity 70.0 4320 > th dose independent rect. 14 22
729 33.18 temperature 25.0 30 > th dose dependent rect. 20 1
781 33.19 humidity 70.0 4320 > th dose independent no NA NA
785 33.19 humidity 70.0 4320 > th dose independent rect. 21 1
788 33.19 wind 1.0 14400 < th dose independent rect. 4 3
878 33.19 temperature 15.0 30 > th dose independent rect. 21 23
886 33.19 humidity 70.0 4320 > th dose independent rect. 10 23
893 33.19 humidity 70.0 4320 < th dose independent rect. 16 23
897 33.19 humidity 90.0 4320 < th dose dependent sin 4 NA
899 33.19 wind 1.0 30 > th dose dependent rect. 20 1
953 33.20 humidity 70.0 4320 < th dose independent no NA NA
955 33.20 temperature 25.0 30 > th dose independent rect. 20 1
959 33.20 temperature 30.0 1440 < th dose independent rect. 21 1
964 33.20 humidity 50.0 1440 > th dose independent rect. 21 1
970 33.20 humidity 90.0 30 < th dose independent rect. 20 1
971 33.20 atmosphere 995.0 1440 > th dose independent rect. 21 1
972 33.20 radiation 1.0 1440 < th dose independent rect. 21 1