Os01g0223700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Apple-like domain containing protein.
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Os01g0223700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Apple-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.84 | 0.311 | 9.86 | -0.962 | 1.05 | 1.06 | 0.223 | 2.26 | 0.218 | 16.1 | 15.71 | 6142 | -- | -- |
| 47.77 | 0.322 | 9.95 | -1.39 | 1.06 | 0.911 | -0.0906 | -- | 0.0797 | 16.1 | 21.4 | 5995 | -- | -- |
| 43.98 | 0.309 | 9.86 | -0.97 | 1.05 | 1.03 | -- | 2.17 | 0.217 | 16.1 | 16.2 | 6142 | -- | -- |
| 47.21 | 0.32 | 9.93 | -1.3 | 1.09 | 0.817 | -- | -- | 0.129 | 15.7 | 21.81 | 2388 | -- | -- |
| 68.84 | 0.386 | 9.9 | -1.07 | -- | 1.86 | -- | 2.12 | 0.144 | -- | 0.4426 | 216 | -- | -- |
| 67.7 | 0.386 | 9.9 | -1.02 | 1.04 | -- | 0.199 | -- | 0.303 | 16.2 | -- | -- | -- | -- |
| 67.81 | 0.386 | 9.9 | -1.02 | 1.04 | -- | -- | -- | 0.304 | 16.2 | -- | -- | -- | -- |
| 68.57 | 0.386 | 9.95 | -1.43 | -- | 1.53 | -- | -- | 0.0118 | -- | 20.8 | 204 | -- | -- |
| 87.54 | 0.436 | 9.88 | -- | 1.11 | 0.492 | -- | -- | 0.349 | 15.8 | 22.99 | 1069 | -- | -- |
| 126.4 | 0.525 | 9.89 | -1.06 | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
| 95.17 | 0.456 | 9.87 | -- | 1.06 | -- | -- | -- | 0.418 | 16.1 | -- | -- | -- | -- |
| 114.44 | 0.498 | 9.88 | -- | -- | 1.21 | -- | -- | 0.292 | -- | 23.84 | 203 | -- | -- |
| 156.08 | 0.583 | 9.87 | -- | -- | -- | -- | -- | 0.394 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 2 | 44.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 4 | 44.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 9 | 44.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 12 | 44.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 13 | 44.22 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 15 | 44.23 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 10 |
| 16 | 44.24 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 23 | 44.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 35 | 44.34 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 52 | 44.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 13 |
| 53 | 44.41 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 5 |
| 81 | 44.46 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 126 | 44.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 9 |
| 155 | 44.54 | temperature | 30 | 4320 | < th | dose dependent | sin | 9 | NA |
| 156 | 44.54 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 172 | 44.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 9 |
| 199 | 44.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 290 | 44.63 | radiation | 1 | 14400 | > th | dose independent | sin | 17 | NA |
| 305 | 44.63 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 2 |
| 399 | 44.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 424 | 44.69 | radiation | 1 | 14400 | < th | dose independent | sin | 16 | NA |
| 476 | 44.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 584 | 44.78 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 660 | 44.82 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |