FiT-DB / Search/ Help/ Sample detail

Os01g0223400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleic acid-binding, OB-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.15 (0.0248) R2 : 0.432
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.844 (0.0593) R2dC : 0.257 R2C : 0.166
β3 : -1.32 (0.11) R2dE : 0.192 R2E : 0.0195
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.493 (0.0533) R2dN8 : 0.146 R2N8 : 0.038
σ : 0.461
deviance : 98.18
__
_____
C
peak time of C : 11.1
E
wheather : temperature
threshold : 15.92
memory length : 226
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.89 0.445 9.09 0.433 0.799 -1.24 0.206 3.09 0.632 11.1 18.8 279 -- --
97.31 0.459 9.15 -0.143 0.83 -1.28 0.373 -- 0.459 10.8 12.9 222 -- --
89.91 0.442 9.08 0.466 0.838 -1.24 -- 3.24 0.638 11 18.7 234 -- --
97.88 0.461 9.15 -0.12 0.848 -1.23 -- -- 0.476 11 16.37 213 -- --
113.8 0.497 9.08 0.618 -- -1.44 -- 3.27 0.684 -- 19.33 657 -- --
116.19 0.505 9.19 -0.411 0.863 -- 0.346 -- 0.283 9.27 -- -- -- --
116.62 0.506 9.19 -0.399 0.863 -- -- -- 0.283 9.23 -- -- -- --
119.85 0.51 9.16 -0.0303 -- -1.37 -- -- 0.523 -- 17.8 679 -- --
98.18 0.461 9.15 -- 0.844 -1.32 -- -- 0.493 11.1 15.92 226 -- --
159.84 0.591 9.21 -0.402 -- -- -- -- 0.287 -- -- -- -- --
120.81 0.514 9.18 -- 0.863 -- -- -- 0.327 9.27 -- -- -- --
119.87 0.51 9.16 -- -- -1.39 -- -- 0.529 -- 17.78 678 -- --
164.1 0.598 9.2 -- -- -- -- -- 0.331 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.98 radiation 1 14400 > th dose independent rect. 18 11
2 83.97 atmosphere 995 43200 < th dose dependent rect. 15 2
4 84.10 atmosphere 995 43200 < th dose independent rect. 14 4
5 84.10 atmosphere 995 43200 > th dose independent rect. 13 6
14 84.13 atmosphere 995 43200 > th dose independent rect. 14 3
15 84.19 atmosphere 995 43200 < th dose independent rect. 15 1
21 84.31 atmosphere 995 43200 > th dose independent rect. 15 1
26 84.33 radiation 1 14400 > th dose independent rect. 18 1
65 85.72 humidity 90 43200 < th dose independent rect. 13 1
78 86.08 humidity 90 43200 > th dose independent rect. 12 3
79 86.09 humidity 90 43200 < th dose independent rect. 12 3
80 86.13 radiation 1 14400 < th dose independent rect. 18 12
92 86.47 humidity 90 43200 > th dose independent rect. 13 1
145 87.46 wind 1 43200 > th dose independent rect. 8 4
158 87.73 wind 1 43200 < th dose dependent rect. 11 1
167 87.94 humidity 90 14400 > th dose independent rect. 21 1
169 88.01 wind 3 43200 > th dose independent rect. 8 14
183 88.29 humidity 80 43200 > th dose independent rect. 20 13
185 88.30 wind 3 43200 < th dose independent rect. 8 14
186 88.30 humidity 90 43200 > th dose dependent rect. 13 2
195 88.44 temperature 20 1440 < th dose independent rect. 4 3
200 88.48 humidity 80 43200 > th dose independent rect. 20 6
210 88.54 atmosphere 995 43200 > th dose independent sin 22 NA
212 88.54 wind 3 43200 > th dose independent rect. 8 9
225 88.56 humidity 80 43200 < th dose independent rect. 20 14
227 88.60 atmosphere 995 43200 < th dose independent sin 22 NA
228 88.60 wind 3 43200 > th dose independent rect. 9 7
230 88.61 wind 3 43200 > th dose independent sin 22 NA
231 88.61 wind 1 43200 > th dose independent rect. 24 2
235 88.65 wind 3 43200 < th dose independent rect. 8 9
241 88.68 temperature 20 1440 > th dose independent rect. 4 3
249 88.77 humidity 80 43200 < th dose independent rect. 20 5
266 88.83 radiation 1 14400 < th dose independent rect. 18 7
275 88.85 temperature 20 4320 > th dose dependent rect. 17 1
278 88.87 wind 3 43200 > th dose independent rect. 18 4
285 88.89 radiation 1 14400 < th dose independent rect. 18 2
290 88.89 wind 5 43200 < th dose dependent rect. 8 13
301 88.94 wind 3 43200 < th dose independent rect. 18 4
305 88.95 humidity 80 43200 > th dose independent rect. 23 11
316 88.97 radiation 1 43200 < th dose dependent rect. 4 1
319 88.98 wind 3 43200 > th dose independent rect. 11 4
322 88.99 temperature 20 1440 > th dose dependent rect. 7 1
326 89.01 humidity 90 14400 < th dose independent rect. 18 1
330 89.02 humidity 80 43200 < th dose independent rect. 23 11
341 89.05 wind 3 43200 < th dose independent sin 22 NA
343 89.05 wind 5 43200 < th dose dependent sin 21 NA
353 89.10 humidity 80 43200 > th dose independent rect. 17 1
356 89.12 wind 3 43200 > th dose independent rect. 20 1
362 89.16 wind 3 43200 < th dose dependent rect. 8 7
367 89.17 wind 5 43200 < th dose dependent rect. 8 10
375 89.21 wind 3 43200 > th dose independent rect. 13 1
410 89.30 wind 7 43200 < th dose dependent rect. 14 1
419 89.31 temperature 20 270 > th dose dependent rect. 15 23
420 89.32 wind 3 43200 < th dose independent rect. 20 1
438 89.38 humidity 90 14400 > th dose dependent rect. 21 4
452 89.42 wind 3 14400 > th dose dependent rect. 20 1
469 89.48 wind 1 43200 < th dose dependent rect. 8 4
475 89.49 wind 9 43200 > th dose dependent rect. 18 3
480 89.51 wind 3 43200 < th dose independent rect. 11 4
506 89.58 temperature 20 1440 > th dose dependent rect. 24 9
509 89.59 humidity 80 43200 < th dose independent rect. 16 3
515 89.60 humidity 90 14400 < th dose independent rect. 21 1
519 89.62 wind 1 43200 < th dose independent rect. 24 2
541 89.68 radiation 10 43200 > th dose independent rect. 8 1
553 89.69 humidity 80 43200 < th dose dependent rect. 19 9
558 89.70 wind 5 43200 < th dose dependent rect. 11 5
609 89.86 wind 1 43200 > th dose dependent rect. 14 2
614 89.88 wind 3 43200 < th dose independent rect. 13 1
617 89.89 wind 5 43200 < th dose independent rect. 15 1
618 89.89 humidity 90 14400 > th dose independent rect. 17 11
631 89.91 radiation 1 43200 < th dose dependent rect. 22 7
648 89.95 humidity 80 43200 > th dose dependent rect. 18 1
657 89.97 temperature 20 4320 > th dose independent rect. 18 4
756 90.16 wind 5 43200 > th dose independent rect. 15 1
776 90.17 temperature 20 1440 > th dose dependent rect. 24 1
784 90.18 temperature 20 4320 > th dose dependent sin 18 NA
805 90.21 wind 1 43200 < th dose independent rect. 8 4
812 90.22 humidity 80 43200 > th dose independent sin 9 NA
834 90.25 humidity 90 14400 > th dose independent sin 14 NA
859 90.28 humidity 80 43200 < th dose dependent rect. 20 1
875 90.30 humidity 80 43200 < th dose independent sin 9 NA
938 90.39 temperature 20 4320 < th dose independent rect. 18 4
958 90.41 wind 9 14400 < th dose independent rect. 18 3
959 90.41 humidity 90 14400 < th dose independent rect. 17 6
966 90.42 atmosphere 1010 43200 > th dose dependent rect. 1 1
988 90.45 wind 9 43200 > th dose dependent rect. 18 13
992 90.45 wind 1 43200 < th dose dependent rect. 8 18