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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0223300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0397) R2 : 0.000598
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0437 (0.0836) R2dN8 : 0.000773 R2N8 : 0.000598
σ : 0.748
deviance : 256.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238.08 0.725 3.16 0.0817 0.264 -0.0884 0.499 2.76 0.099 19.1 5.204 136 -- --
249.7 0.736 3.22 0.121 0.229 -0.32 -0.181 -- 0.0552 19.7 11.86 64 -- --
238.61 0.719 3.16 0.0785 0.277 -0.094 -- 2.59 0.103 19.4 5.397 134 -- --
249.8 0.736 3.21 0.125 0.225 -0.349 -- -- 0.0556 20.1 10.6 64 -- --
241.22 0.723 3.16 0.126 -- -0.255 -- 2.47 0.0903 -- 5.06 138 -- --
250.46 0.742 3.21 0.043 0.329 -- -0.564 -- 0.0574 18.1 -- -- -- --
251.11 0.742 3.22 0.0473 0.329 -- -- -- 0.0547 18.7 -- -- -- --
252.15 0.74 3.21 0.153 -- -0.479 -- -- 0.0509 -- 10.72 93 -- --
250.17 0.737 3.22 -- 0.24 -0.286 -- -- 0.0425 19.8 14.23 64 -- --
256.76 0.749 3.21 0.0396 -- -- -- -- 0.0481 -- -- -- -- --
251.17 0.741 3.22 -- 0.328 -- -- -- 0.0494 18.7 -- -- -- --
252.73 0.74 3.21 -- -- -0.434 -- -- 0.0348 -- 11.52 93 -- --
256.8 0.748 3.21 -- -- -- -- -- 0.0437 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.57 wind 1 270 < th dose dependent rect. 17 4
4 233.73 wind 1 270 < th dose independent rect. 18 3
15 236.27 atmosphere 1000 90 < th dose independent rect. 21 3
16 237.09 wind 5 90 < th dose dependent rect. 3 23
21 237.25 atmosphere 1000 10 < th dose independent rect. 21 4
25 237.33 temperature 25 90 < th dose independent rect. 10 18
37 237.70 wind 1 270 > th dose independent sin 19 NA
49 238.11 wind 1 270 < th dose independent rect. 13 10
50 238.17 wind 5 10 < th dose dependent rect. 4 22
51 238.22 wind 1 270 < th dose independent sin 19 NA
54 238.25 wind 1 270 < th dose independent rect. 10 14
56 238.25 temperature 25 270 < th dose independent rect. 8 19
62 238.35 wind 5 90 < th dose dependent rect. 1 23
65 238.41 temperature 25 10 < th dose independent rect. 11 20
78 238.51 wind 5 90 < th dose dependent rect. 17 22
86 238.59 wind 5 90 < th dose dependent rect. 15 23
89 238.62 wind 1 270 < th dose dependent rect. 11 13
93 238.67 wind 1 90 > th dose dependent rect. 10 18
94 238.68 atmosphere 1000 90 < th dose independent rect. 22 1
98 238.69 wind 5 90 < th dose dependent rect. 19 23
100 238.70 wind 7 90 < th dose dependent rect. 12 23
102 238.72 wind 5 90 < th dose dependent no NA NA
104 238.73 wind 1 270 < th dose dependent rect. 9 15
106 238.74 wind 1 270 > th dose dependent rect. 8 20
114 238.81 wind 7 720 < th dose dependent rect. 13 1
115 238.82 wind 5 270 < th dose dependent rect. 11 12
125 238.88 wind 5 90 < th dose independent rect. 12 23
128 238.90 wind 5 90 < th dose dependent rect. 19 20
132 238.91 wind 5 270 < th dose dependent rect. 9 23
135 238.92 wind 1 90 > th dose dependent rect. 20 21
136 238.94 wind 9 720 < th dose dependent rect. 12 3
141 239.01 wind 3 270 > th dose independent rect. 9 14
145 239.03 wind 1 90 > th dose dependent rect. 20 23
160 239.08 wind 3 270 > th dose independent rect. 9 18
161 239.08 humidity 60 4320 < th dose dependent rect. 16 1
167 239.12 atmosphere 1015 4320 > th dose dependent rect. 3 1
178 239.16 wind 1 90 > th dose dependent rect. 15 23
181 239.19 wind 3 30 > th dose independent rect. 21 21
203 239.29 wind 3 270 < th dose dependent sin 19 NA
210 239.32 atmosphere 1015 4320 > th dose independent rect. 3 2
216 239.34 atmosphere 1015 4320 > th dose dependent rect. 2 4
223 239.37 wind 5 90 < th dose independent rect. 4 23
228 239.40 temperature 30 90 < th dose dependent rect. 10 20
230 239.40 wind 1 90 > th dose dependent rect. 9 23
234 239.43 humidity 60 4320 < th dose independent rect. 16 2
246 239.46 wind 5 270 < th dose independent rect. 13 19
262 239.50 wind 3 720 < th dose independent rect. 11 3
280 239.54 wind 3 30 > th dose independent rect. 11 17
284 239.54 radiation 30 43200 < th dose dependent rect. 5 1
294 239.56 wind 5 720 < th dose independent rect. 13 1
295 239.56 atmosphere 1015 4320 < th dose independent rect. 3 3
323 239.64 radiation 30 43200 < th dose dependent rect. 17 14
352 239.69 humidity 60 14400 < th dose independent rect. 16 18
363 239.72 humidity 60 14400 > th dose independent rect. 17 1
369 239.74 wind 3 270 < th dose independent rect. 1 23
383 239.77 radiation 20 43200 > th dose dependent rect. 17 15
386 239.78 radiation 20 43200 > th dose dependent rect. 6 2
410 239.81 atmosphere 1015 4320 < th dose independent rect. 5 1
414 239.81 humidity 60 4320 > th dose independent rect. 16 12
415 239.81 humidity 60 4320 > th dose independent rect. 16 15
422 239.83 humidity 60 4320 > th dose independent rect. 16 9
428 239.83 radiation 30 43200 > th dose dependent rect. 16 17
437 239.85 humidity 60 43200 < th dose dependent rect. 17 1
445 239.85 radiation 20 43200 < th dose dependent rect. 23 7
449 239.85 radiation 20 43200 < th dose dependent rect. 20 10
453 239.85 wind 1 30 < th dose dependent rect. 11 13
471 239.86 wind 1 270 > th dose dependent rect. 13 23
488 239.88 atmosphere 1015 4320 > th dose dependent rect. 5 1
490 239.88 humidity 70 4320 < th dose dependent rect. 16 3
509 239.90 temperature 25 90 < th dose independent rect. 10 13
532 239.92 wind 5 270 < th dose independent rect. 15 17
542 239.93 radiation 1 43200 > th dose dependent rect. 17 14
583 240.00 wind 5 90 > th dose independent rect. 20 18
598 240.00 wind 1 270 > th dose dependent rect. 17 23
620 240.04 wind 3 270 > th dose independent rect. 24 23
621 240.04 wind 1 90 > th dose dependent no NA NA
626 240.05 wind 3 270 < th dose independent rect. 9 23
632 240.06 wind 1 43200 < th dose dependent rect. 23 2
636 240.07 radiation 40 43200 < th dose independent rect. 16 18
646 240.09 radiation 40 43200 < th dose independent sin 11 NA
647 240.09 radiation 40 43200 < th dose independent rect. 7 3
657 240.10 radiation 20 43200 > th dose independent rect. 6 1
672 240.10 radiation 40 43200 < th dose independent rect. 23 11
675 240.10 radiation 40 43200 < th dose independent rect. 20 14
698 240.11 temperature 25 90 < th dose independent rect. 20 21
709 240.11 wind 1 90 > th dose dependent rect. 23 23
745 240.14 atmosphere 1015 4320 > th dose independent rect. 23 8
753 240.14 wind 9 720 < th dose dependent rect. 4 20
846 240.22 atmosphere 1015 4320 < th dose independent rect. 23 9
860 240.24 wind 5 90 > th dose independent rect. 20 15
886 240.25 radiation 30 43200 > th dose independent rect. 16 17
890 240.25 wind 5 10 < th dose independent rect. 13 22