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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0222900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.42 (0.0264) R2 : 0.537
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.48 (0.0782) R2dE : 0.43 R2E : 0.503
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.275 (0.0592) R2dN8 : 0.0342 R2N8 : 0.107
σ : 0.487
deviance : 109.47
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.536
memory length : 37457
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.1 0.475 5.29 1.18 0.525 -1.57 -0.0788 -2.24 0.6 5.39 1.325 14460 -- --
100.23 0.466 5.37 0.619 0.542 -1.03 0.11 -- 0.421 5.4 2.207 23048 -- --
98.5 0.462 5.27 1.08 0.518 -1.63 -- -2.46 0.61 5.69 0.5417 20237 -- --
96.96 0.459 5.39 0.421 0.498 -1.27 -- -- 0.335 5.85 1.925 28850 -- --
109.47 0.487 5.27 0.783 -- -1.74 -- -2.32 0.631 -- 2.472e-07 21603 -- --
138.51 0.552 5.29 1.25 0.542 -- -0.018 -- 0.836 5.44 -- -- -- --
138.51 0.551 5.29 1.25 0.542 -- -- -- 0.836 5.44 -- -- -- --
111.01 0.491 5.4 0.333 -- -1.33 -- -- 0.349 -- 1.905 28817 -- --
95.29 0.455 5.41 -- 0.566 -1.46 -- -- 0.275 5.34 1.607 37498 -- --
153.79 0.579 5.29 1.26 -- -- -- -- 0.85 -- -- -- -- --
179.38 0.627 5.32 -- 0.563 -- -- -- 0.698 5.35 -- -- -- --
109.47 0.487 5.42 -- -- -1.48 -- -- 0.275 -- 1.536 37457 -- --
195.9 0.653 5.32 -- -- -- -- -- 0.709 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.55 wind 3.0 43200 < th dose dependent rect. 22 1
2 94.08 precipitation 0.1 43200 > th dose independent rect. 2 4
3 94.27 precipitation 0.1 43200 < th dose independent rect. 2 4
4 94.27 precipitation 0.1 43200 < th dose dependent rect. 2 4
8 94.56 precipitation 0.1 43200 > th dose dependent rect. 2 4
30 95.26 precipitation 0.1 43200 > th dose dependent rect. 4 2
44 95.45 radiation 1.0 43200 < th dose dependent rect. 19 11
45 95.46 radiation 1.0 43200 < th dose dependent rect. 23 7
53 95.55 radiation 1.0 43200 < th dose dependent rect. 3 3
78 96.07 humidity 70.0 43200 < th dose dependent rect. 1 8
96 96.16 precipitation 0.1 43200 > th dose dependent rect. 23 9
99 96.18 humidity 70.0 43200 < th dose independent rect. 7 1
103 96.26 radiation 1.0 43200 > th dose independent rect. 18 12
110 96.27 precipitation 0.1 43200 < th dose independent rect. 23 9
111 96.27 precipitation 0.1 43200 < th dose dependent rect. 23 9
114 96.29 precipitation 0.1 43200 > th dose independent rect. 23 9
116 96.30 radiation 1.0 43200 < th dose independent rect. 18 12
119 96.31 temperature 20.0 14400 < th dose dependent rect. 6 1
141 96.52 radiation 1.0 43200 < th dose dependent sin 9 NA
153 96.56 radiation 1.0 43200 < th dose dependent rect. 18 18
171 96.70 radiation 1.0 43200 < th dose dependent rect. 23 13
180 96.73 atmosphere 1010.0 43200 > th dose dependent rect. 7 1
188 96.74 atmosphere 1010.0 43200 > th dose dependent rect. 5 1
190 96.75 humidity 60.0 43200 > th dose independent rect. 2 7
192 96.75 radiation 1.0 43200 < th dose dependent rect. 3 9
198 96.76 atmosphere 1010.0 43200 > th dose dependent rect. 5 4
255 96.92 humidity 70.0 43200 < th dose independent rect. 4 4
275 96.97 radiation 1.0 43200 > th dose independent rect. 18 18
284 96.99 radiation 1.0 43200 < th dose independent rect. 18 18
304 97.04 humidity 90.0 14400 > th dose dependent rect. 5 1
317 97.08 radiation 1.0 43200 > th dose independent rect. 18 15
318 97.08 radiation 1.0 43200 < th dose independent rect. 18 15
334 97.12 atmosphere 1010.0 43200 < th dose independent rect. 11 1
351 97.14 humidity 90.0 14400 < th dose independent rect. 24 1
368 97.17 atmosphere 1010.0 43200 > th dose dependent sin 4 NA
400 97.23 atmosphere 1010.0 43200 > th dose independent rect. 11 1
401 97.23 atmosphere 1010.0 43200 < th dose independent rect. 5 1
426 97.26 radiation 1.0 43200 < th dose dependent rect. 17 9
473 97.33 radiation 1.0 43200 < th dose dependent rect. 17 3
523 97.38 atmosphere 1010.0 43200 > th dose independent rect. 5 1
539 97.40 temperature 20.0 43200 < th dose independent rect. 6 3
561 97.42 temperature 20.0 43200 < th dose independent rect. 5 5
573 97.43 temperature 20.0 43200 > th dose independent rect. 6 4
574 97.43 wind 1.0 14400 < th dose dependent rect. 23 4
610 97.46 atmosphere 1010.0 43200 > th dose independent rect. 4 8
710 97.53 atmosphere 1010.0 43200 > th dose dependent no NA NA
747 97.56 atmosphere 1010.0 43200 > th dose dependent rect. 7 23
800 97.63 atmosphere 1010.0 43200 < th dose independent rect. 4 8
837 97.67 radiation 1.0 43200 > th dose independent rect. 5 7
856 97.69 radiation 10.0 43200 < th dose independent rect. 16 1
867 97.69 humidity 70.0 43200 > th dose dependent rect. 12 3
882 97.70 radiation 1.0 43200 < th dose dependent rect. 10 22
893 97.72 radiation 10.0 43200 < th dose independent rect. 15 3
906 97.73 radiation 1.0 43200 < th dose independent rect. 5 7
907 97.73 radiation 1.0 43200 < th dose independent rect. 3 9
921 97.73 radiation 1.0 43200 < th dose dependent rect. 7 23
973 97.78 radiation 1.0 43200 < th dose dependent no NA NA
980 97.78 radiation 1.0 43200 < th dose dependent rect. 23 20
984 97.78 radiation 1.0 43200 < th dose dependent rect. 4 22