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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0222300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.05) R2 : 9.78e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0222 (0.105) R2dN8 : 0.000126 R2N8 : 9.78e-05
σ : 0.942
deviance : 407.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
376.29 0.911 3.17 -0.218 0.241 -0.418 -1.03 2.77 -0.134 12.4 39.99 10196 -- --
380.05 0.908 3.22 0.0221 0.187 -0.613 -1.29 -- 0.111 12.9 61.63 7654 -- --
380.82 0.909 3.18 -0.255 0.243 -0.403 -- 2.76 -0.128 12.7 39.99 10200 -- --
379.71 0.908 3.16 0.239 0.238 -0.813 -- -- 0.176 13.7 64.27 10448 -- --
384.6 0.913 3.18 -0.272 -- -0.395 -- 2.81 -0.128 -- 40 10200 -- --
397.83 0.935 3.21 -0.134 0.243 -- -1.05 -- -0.033 12.6 -- -- -- --
402.5 0.94 3.21 -0.173 0.251 -- -- -- -0.0374 13.2 -- -- -- --
381.02 0.909 3.17 0.39 -- -1.07 -- -- 0.177 -- 64.27 10448 -- --
381.39 0.91 3.16 -- 0.204 -0.833 -- -- 0.144 13.1 64.27 10448 -- --
406.39 0.942 3.22 -0.183 -- -- -- -- -0.0425 -- -- -- -- --
403.29 0.939 3.21 -- 0.254 -- -- -- -0.0181 13.3 -- -- -- --
384.16 0.913 3.18 -- -- -0.899 -- -- 0.141 -- 64.1 10448 -- --
407.28 0.942 3.21 -- -- -- -- -- -0.0222 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 366.24 radiation 40.0 14400 < th dose independent rect. 16 9
2 366.48 radiation 40.0 14400 < th dose independent rect. 16 6
4 366.84 radiation 40.0 14400 < th dose independent rect. 16 2
9 367.19 radiation 40.0 14400 < th dose independent rect. 16 13
10 367.26 radiation 40.0 14400 < th dose independent rect. 16 15
13 367.76 radiation 30.0 14400 > th dose dependent rect. 16 1
29 368.20 radiation 30.0 14400 > th dose independent rect. 16 1
46 368.95 radiation 20.0 14400 < th dose independent rect. 17 3
47 369.07 radiation 20.0 14400 < th dose independent rect. 17 12
48 369.12 radiation 20.0 14400 < th dose independent rect. 17 5
49 369.12 radiation 20.0 14400 < th dose independent rect. 17 7
50 369.26 radiation 20.0 14400 < th dose independent rect. 17 1
58 369.48 radiation 20.0 14400 < th dose independent rect. 17 10
69 370.29 radiation 40.0 14400 < th dose independent rect. 15 17
71 370.46 radiation 40.0 4320 > th dose dependent rect. 15 17
104 370.95 wind 9.0 43200 < th dose independent rect. 1 1
123 371.47 humidity 60.0 43200 < th dose dependent rect. 18 1
124 371.91 radiation 40.0 43200 > th dose dependent rect. 15 17
146 372.08 wind 9.0 43200 > th dose dependent rect. 1 1
154 372.30 radiation 1.0 14400 < th dose dependent rect. 7 5
157 372.43 temperature 15.0 43200 > th dose independent rect. 18 1
160 372.48 temperature 15.0 43200 < th dose independent rect. 18 1
182 372.67 temperature 15.0 43200 < th dose independent rect. 18 5
183 372.69 humidity 90.0 14400 < th dose dependent rect. 4 2
184 372.70 humidity 90.0 14400 < th dose dependent rect. 3 4
185 372.71 temperature 15.0 43200 < th dose independent rect. 22 1
192 372.85 temperature 15.0 43200 > th dose independent rect. 22 1
193 372.86 temperature 15.0 43200 > th dose independent rect. 17 6
195 372.89 radiation 1.0 14400 < th dose independent rect. 4 1
205 373.05 wind 9.0 43200 > th dose independent rect. 1 1
221 373.25 radiation 1.0 14400 < th dose independent rect. 2 3
227 373.32 radiation 20.0 14400 < th dose independent rect. 4 3
228 373.34 radiation 1.0 14400 > th dose dependent rect. 18 1
238 373.35 radiation 20.0 14400 < th dose independent rect. 2 5
258 373.41 radiation 40.0 43200 > th dose dependent rect. 14 19
292 373.55 radiation 10.0 43200 < th dose dependent rect. 17 13
298 373.60 radiation 20.0 14400 < th dose independent rect. 6 1
301 373.61 humidity 70.0 14400 < th dose dependent rect. 15 2
302 373.61 humidity 90.0 14400 < th dose dependent rect. 24 8
308 373.68 humidity 50.0 43200 < th dose independent rect. 16 20
314 373.71 radiation 20.0 14400 < th dose independent rect. 21 10
315 373.72 radiation 1.0 14400 > th dose independent rect. 8 2
316 373.72 radiation 20.0 14400 < th dose independent rect. 23 8
324 373.78 humidity 60.0 14400 < th dose independent rect. 15 2
328 373.79 temperature 15.0 43200 < th dose independent rect. 13 12
331 373.81 humidity 70.0 14400 > th dose independent rect. 21 1
340 373.85 radiation 10.0 43200 > th dose dependent rect. 5 1
363 373.89 temperature 15.0 43200 > th dose independent rect. 13 11
365 373.90 humidity 70.0 14400 > th dose independent rect. 21 3
367 373.90 atmosphere 1015.0 14400 > th dose dependent rect. 3 1
373 373.92 temperature 15.0 43200 > th dose independent rect. 10 14
386 373.97 temperature 15.0 43200 < th dose independent rect. 10 15
402 374.03 radiation 40.0 14400 < th dose dependent rect. 4 1
416 374.09 humidity 50.0 43200 > th dose independent rect. 16 19
461 374.20 temperature 15.0 43200 > th dose independent sin 18 NA
467 374.23 humidity 60.0 14400 < th dose independent rect. 6 1
469 374.23 humidity 60.0 14400 < th dose independent rect. 20 1
526 374.23 humidity 60.0 14400 < th dose dependent rect. 6 1
528 374.23 humidity 60.0 14400 < th dose dependent rect. 20 1
584 374.25 humidity 60.0 14400 > th dose independent rect. 15 2
593 374.27 temperature 15.0 43200 < th dose independent sin 17 NA
604 374.28 radiation 1.0 14400 < th dose independent rect. 8 2
613 374.31 temperature 15.0 43200 < th dose independent rect. 10 1
617 374.33 temperature 15.0 43200 > th dose independent rect. 10 10
622 374.36 humidity 70.0 14400 > th dose independent rect. 21 8
624 374.37 temperature 15.0 43200 > th dose independent rect. 10 1
636 374.41 temperature 15.0 43200 < th dose independent rect. 13 1
646 374.44 precipitation 0.1 14400 < th dose independent rect. 4 1
647 374.44 precipitation 0.1 14400 < th dose dependent rect. 4 1
658 374.47 temperature 15.0 14400 < th dose dependent rect. 4 1
662 374.48 humidity 90.0 14400 < th dose dependent rect. 21 14
667 374.50 temperature 15.0 43200 > th dose independent rect. 10 5
699 374.55 radiation 1.0 14400 > th dose independent rect. 4 1
720 374.56 radiation 1.0 14400 > th dose independent rect. 8 4
749 374.63 humidity 60.0 14400 > th dose independent rect. 19 13
788 374.66 temperature 15.0 43200 > th dose independent rect. 13 1
805 374.68 radiation 20.0 43200 < th dose dependent rect. 2 4
809 374.69 humidity 90.0 43200 > th dose independent rect. 24 1
840 374.73 humidity 70.0 14400 > th dose independent rect. 20 11
841 374.73 precipitation 0.1 14400 > th dose dependent rect. 4 1
848 374.74 radiation 20.0 43200 < th dose dependent rect. 23 7
851 374.75 humidity 50.0 43200 > th dose independent rect. 17 17
888 374.80 humidity 60.0 14400 > th dose independent rect. 7 1
941 374.93 precipitation 0.1 14400 > th dose independent rect. 4 1
957 374.96 radiation 1.0 14400 < th dose independent rect. 8 4
967 374.98 humidity 90.0 14400 < th dose dependent sin 9 NA
983 375.04 wind 7.0 43200 > th dose dependent rect. 13 1
990 375.06 temperature 15.0 14400 < th dose independent rect. 9 3
993 375.06 radiation 40.0 43200 > th dose dependent rect. 8 1