Os01g0221800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os01g0221800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.2 | 0.374 | 12.7 | -0.753 | 1.1 | -0.845 | 0.203 | -0.161 | -0.635 | 22.1 | 80.14 | 1606 | -- | -- |
| 63.13 | 0.37 | 12.7 | -0.761 | 1.08 | -0.845 | 0.211 | -- | -0.637 | 22.2 | 80.1 | 1701 | -- | -- |
| 63.35 | 0.371 | 12.7 | -0.765 | 1.11 | -0.844 | -- | -0.111 | -0.636 | 22.1 | 80.27 | 1594 | -- | -- |
| 63.31 | 0.371 | 12.7 | -0.768 | 1.08 | -0.85 | -- | -- | -0.638 | 22.2 | 80.38 | 1695 | -- | -- |
| 92.76 | 0.449 | 12.6 | -0.752 | -- | -1.15 | -- | -0.882 | -0.624 | -- | 74 | 861 | -- | -- |
| 71.35 | 0.396 | 12.7 | -0.757 | 1.09 | -- | 0.184 | -- | -0.594 | 21.8 | -- | -- | -- | -- |
| 71.48 | 0.396 | 12.7 | -0.764 | 1.09 | -- | -- | -- | -0.594 | 21.8 | -- | -- | -- | -- |
| 91.39 | 0.445 | 12.7 | -0.776 | -- | -1.23 | -- | -- | -0.652 | -- | 81.66 | 849 | -- | -- |
| 78.31 | 0.412 | 12.7 | -- | 1.06 | -0.828 | -- | -- | -0.571 | 22.1 | 81 | 1739 | -- | -- |
| 141.76 | 0.556 | 12.7 | -0.753 | -- | -- | -- | -- | -0.595 | -- | -- | -- | -- | -- |
| 86.87 | 0.436 | 12.7 | -- | 1.08 | -- | -- | -- | -0.509 | 21.7 | -- | -- | -- | -- |
| 107.25 | 0.482 | 12.7 | -- | -- | -1.23 | -- | -- | -0.566 | -- | 81.38 | 857 | -- | -- |
| 156.73 | 0.584 | 12.6 | -- | -- | -- | -- | -- | -0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.69 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 57.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 4 | 57.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 6 | 57.98 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 13 | 58.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 17 | 58.18 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 21 | 58.26 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 22 | 58.26 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 25 | 58.33 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 35 | 58.39 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 37 | 58.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 47 | 58.46 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 61 | 58.56 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 62 | 58.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 105 | 58.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 111 | 58.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 118 | 58.77 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 131 | 58.82 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 139 | 58.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 149 | 58.88 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 155 | 58.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 158 | 58.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 177 | 58.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 192 | 58.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 198 | 58.97 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 223 | 59.04 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 246 | 59.10 | humidity | 90.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 247 | 59.10 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 248 | 59.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 262 | 59.12 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 265 | 59.13 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 2 | NA |
| 266 | 59.13 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 2 | NA |
| 272 | 59.13 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 273 | 59.13 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 294 | 59.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 299 | 59.17 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 300 | 59.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 369 | 59.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 396 | 59.30 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 430 | 59.35 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 436 | 59.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 439 | 59.36 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 495 | 59.44 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 522 | 59.47 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 530 | 59.47 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 568 | 59.51 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 582 | 59.53 | humidity | 90.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 592 | 59.54 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 631 | 59.57 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 679 | 59.62 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 732 | 59.66 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 763 | 59.70 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 810 | 59.73 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 834 | 59.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 860 | 59.77 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 899 | 59.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 905 | 59.80 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 910 | 59.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 912 | 59.81 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 950 | 59.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 964 | 59.84 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 991 | 59.86 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 7 |